1. A. Berdonces-Layunta, A. Matěj, A. Jiménez-Martín, J. Lawrence, M.S.G. Mohammed, T. Wang, B. J. Mallada Faes, B. De La Torre Cerdeño, A. Martínez, M. Vilas-Varela, R. Nieman, H. Lischka, D. Nachtigallová, D.Peña, P. Jelínek, D. G. de Oteyza
    The effect of water on gold supported chiral graphene nanoribbons: rupture of conjugation by an alternating hydrogenation pattern
    Nanoscale 16 (2024) 734-741.
  2. L. Wang, X. Peng, J. Su, J. Wang, A. J. Gallardo Caparrós, H. Yang, Q. Chen, P. Lyu, P. Jelínek, J. Liu, M.W. Wong, J. Lu
    Highly Selective On-Surface Ring-Opening of Aromatic Azulene Moiety
    Journal of the American Chemical Society 146 (2024) 1563-1571.
  3. Sh. Song, A. Pinar Solé, A. Matěj, G. Li, O. Stetsovych, D. Soler, H. Yang, M. Telychko, J. Li, M. Kumar, Q. Chen, S. Edalatmanesh, J. Brabec, L. Veis, J. Wu, P. Jelínek, J. Lu
    Highly entangled polyradical nanographene with coexisting strong correlation and topological frustration
    Nature Chemistry 0 (2024) 1-5.
  4. F. Frezza, A. Matěj, A. Sánchez-Grande, M. Carrera, P. Mutombo, M. Kumar, D. Curiel, P. Jelínek
    On-Surface Synthesis of a Radical 2D Supramolecular Organic Framework
    Journal of the American Chemical Society 146 (2024) 3531-3538.
  5. K. Biswas, Q. Chen, S. Obermann, J. Ma, D. Soler‐Polo, J. Melidonie, A. Barragán, A. Sánchez‐Grande, K. Lauwaet, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    On‐Surface Synthesis of Non‐Benzenoid Nanographenes Embedding Azulene and Stone‐Wales Topologies
    Angewandte Chemie International Edition 63 (2024) e2023181-1- e2023181-9.
  6. R. Zuzak, M. Kumar, O. Stoica, D. Soler-Polo, J. Brabec, K. Pernal, L. Veis, R. Blieck, A. M. Echavarren, P. Jelínek, S. Godlewski
    On-Surface Synthesis and Determination of the Open-Shell Singlet Ground State of Tridecacene
    Angewandte Chemie International Edition 63 (2024) 202317091(1)-202317091(8).
  7. A. Cahlík, M. Ondráček, Christian Wäckerlin, Andres Pinar Solé, Olivier Siri, M. Švec, P. Jelínek
    Light-Controlled Multiconfigurational Conductance Switching in a Single 1D Metal-Organic Wire
    ACS Nano 1 (2024) 1-9.
  8. X. Liu, A. Matěj, T. Kratky, J.I. Mendieta-Moreno, S. Günther, P. Mutombo, S. Decurtins, U. Aschauer, J. Repp, P. Jelínek, Sh. Liu, L.L. Patera
    Exploiting Cooperative Catalysis for the On-surface Synthesis ofLinear Heteroaromatic Polymers via Selective C-H Activation
    Angewandte Chemie International Edition 61 (2022) e20211279(1)-e20211279(6).
  9. J.W. Park, E. Do, J.S. Shin, S. K. Song, O. Stetsovych, P. Jelínek, H.W.Yeom
    Creation and annihilation of mobile fractional solitons in atomic chains
    Nature Nanotechnology 17 (2022) 244-249.
  10. Zh. Zeng, D. Guo, T. Wang, Q. Chen, A. Matěj, J. Huang, D. Han, Q. Xu, A. Zhao, P. Jelínek, D.G. de Oteyza, J.-S. McEwen, J. Zhu
    Chemisorption-Induced Formation of Biphenylene Dimer on Ag(111)
    Journal of the American Chemical Society 144 (2022) 723-732.
  11. F. Evers, A. Aharony, N. Bar-Gill, O. Entin-Wohlman, P. Hedegård, O. Hod, P. Jelínek, G. Kamieniarz, M. Lemeshko, K. Michaeli, V. Mujica, R. Naaman, Y. Paltiel, S. Refaely-Abramson, O. Tal, J. Thijssen, M. Thoss, J.M. van Ruitenbeek, L. Venkataraman, D. H. Waldeck, B. Yan, L. Kronik
    Theory of Chirality Induced Spin Selectivity: Progress and Challenges
    Advanced Materials 34, (2022) 2106629(1)-2106629(11).
  12. K. Biswas, J.I. Urgel, M. R. Ajayakumar, J.Ma, A. Sánchez-Grande, S. Edalatmanesh, K. Lauwaet, P. Mutombo, J.M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    Synthesis and Characterization of peri-Heptacene on a Metallic Surface
    Angewandte Chemie International Edition 61 (2022) e2021149-1- e2021149-5.
  13. E. Do, J.W. Park, O. Stetsovych, P. Jelínek, H. Woong
    Z3 Charge Density Wave of Silicon Atomic Chains on a Vicinal Silicon Surface
    ACS Nano 16 (2022) 6598- 6604.
  14. H. Fang, A. J. Gallardo Caparrós, D. Dulal, Zh. Qiu, J. Su, M. Telychko, H. Mahalingam, P. Lyu, Y. Han, Y. Zheng, Y. Cai, A. Rodin, P. Jelínek, J. Lu
    Electronic Self-Passivation of Single Vacancy in Black Phosphorus via Ionization
    Physical Review Letters 128 (2022) 176801(1)-176801(6).
  15. M. Telychko, S. Edalatmanesh, K. Leng, I. Abdelwahab, N. Guo, Ch. Zhang, J.I. Mendieta-Moreno, M. Nachtigall, J. Li, K.P. Loh, P. Jelínek, J. Lu
    Sub-angstrom noninvasive imaging of atomic arrangement in 2D hybrid perovskites
    Science Advances 8 (2022) eabj0395(1)-eabj0395(8).
  16. K. Biswas, M. Urbani, A. Sánchez Grande, D. Soler Polo, K. Lauwaet, A. Matěj, P. Mutombo, L. Veis, J. Brabec, K. Pernal, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, T. Torres, J.I. Urgel
    Interplay between π-Conjugation and Exchange Magnetism in One-Dimensional Porphyrinoid Polymers
    Journal of the American Chemical Society 144 (2022) 12725-12731.
  17. Ch. Wäckerlin, A. Cahlík, J. Goikoetxea, O. Stetsovych, D. Kývala, J. R. López Roso Redondo, M. Švec, B. Delley, M. Ondráček, A. Pinar Solé, M. Blanco-Rey, J. Kolorenč, A. Arnau, P. Jelínek
    Role of the Magnetic Anisotropy in Atomic-Spin Sensing of 1D Molecular Chains
    ACS Nano 16 (2022) 16402-16413.
  18. J. I. Mendieta-Moreno, B. J. Mallada Faes, B. De La Torre Cerdeño, T. Cadart, M. Kotora, P. Jelínek
    Unusual Scaffold Rearrangement in Polyaromatic Hydrocarbons Driven by Concerted Action of Single Gold Atoms on a Gold Surface
    Angewandte Chemie International Edition 61 (2022) e202208010-1-e202208010-6.
  19. J. Lawrence, A. Berdonces-Layunta, S. Edalatmanesh, J. Castro-Esteban, T. Wang, A. Jimenez-Martin, B. De La Torre Cerdeño, R. Castrillo-Bodero, P. Angulo-Portugal, M.S.G. Mohammed, A. Matěj, M. Vilas-Varela, F. Schiller, M. Corso, P. Jelínek, D. Peña, D.G. de Oteyza
    Circumventing the stability problems of graphene nanoribbon zigzag edges
    Nature Chemistry 14 (2022) 1451-1458 .
  20. B. Lowe, J. Hellerstedt, A. Matěj, P. Mutombo, D. Kumar, M. Ondráček, P. Jelínek, A. Schiffrin
    Selective Activation of Aromatic C−H Bonds Catalyzed by Single Gold Atoms at Room Temperature
    Journal of the American Chemical Society 144 (2022) 21389-21397.
  21. B. J. Mallada Faes, Q. Chen, T. Chutora, A. Sánchez-Grande, B. Cirera, J. Santos, N. Martín, D. Ecija, P. Jelínek, B. De La Torre Cerdeño
    Resolving Atomic-Scale Defects in Conjugated Polymers On-Surfaces
    Chemistry-A European Journal 28 (2022) 1-9.
  22. K. Biswas, L. Yang, J. Ma, A. Sánchez-Grande, Q. Chen, K. Lauwaet, J. M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    Defect-Induced π-Magnetism into Non-Benzenoid Nanographenes
    Nanomaterials 12 (2022) 12020224(1)-12020224(9).
  23. Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
    Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
    ACS Nano 7 (2013) 2686-2692.
  24. J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
    Characterization of the mechanical properties of qPlus sensors
    Beilstein Journal of Nanotechnology 4 (2013) 1-9.
  25. A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
    Physical Review B 87 (2013) 155403(1)-155403(10).
  26. E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
    Calculation of non-adiabatic coupling vectors in a local-orbital basis set
    Journal of Chemical Physics 138 (2013) 154106(1)-154106(8).
  27. P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
    Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
    Physical Review B 87 (2013) 195420(1)-195420(13).
  28. A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
    Atomic Structure Affects the Directional Dependence of Friction
    Physical Review Letters 111 (2013) 126103(1)-126103(4).
  29. Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
    Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
    Physical Review Letters 111 (2013) 106803(1)-106803(5).
  30. Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
    ACS Nano 7 (2013) 7370-7376.
  31. P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
    Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
    Physical Review B 88 (2013) 205406(1)-205406(7).
  32. Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
    Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
    Journal of Physics: Condensed Matter 25 (2013) 225301(1)- 225301(6).
  33. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    Journal of Physics: Condensed Matter 24 (2012) 084003(1)-084003(7).
  34. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    Journal of Physics: Condensed Matter 24 (2012) 084001(1)-084001(10).
  35. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein Journal of Nanotechnology 3 (2012) 249-259.
  36. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969-6976.
  37. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    Journal of Physics: Condensed Matter 24 (2012) 445003-445016.
  38. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelínek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Physical Review B 85 (2012) 125416(1)-125416(9).
  39. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Physical Review B 86 (2012) 121407(R)-121412(R).
  40. M. Ondráček, P. Pou, V. Rozsíval, C. González, P. Jelínek, R. Pérez
    Forces and Currents in Carbon Nanostructures: Are We Imaging Atoms?
    Physical Review Letters 106 (2011) 176101(1)-176101(4).
  41. A. Campbellová, M. Ondráček, P. Pou, R. Pérez, P. Klapetek, P. Jelínek
    'Sub-atomic' resolution of non-contact atomic force microscope images induced by a heterogeneous tip structure: a density functional theory study
    Nanotechnology 22 (2011) 295710(1)-295710(7).
  42. Z. Majzik, W. Kamiński, A.J. Weymouth, M. Vondráček, V. Zobač, M. Švec, A. Berkó, A.B. McLean, K.C. Prince, P. Jelínek, V. Cháb
    An Investigation of Ethylene Attachment to Si(111)–7 x 7 in the Restatom–Adatom Bridging Geometry: Electronic and Vibrational Properties
    Journal of Physical Chemistry C 115 (2011) 21791-21799.
  43. M. Ternes, C. González, Ch. P. Lutz, P. Hapala, F.J. Giessibel, P. Jelínek, A.J. Heinrich
    Interplay of Conductance, Force, and Structural Change in Metallic Point Contacts.
    Physical Review Letters 106 (2011) 016802(1)-016802(4).
  44. J.P. Lewis, P. Jelínek, J. Ortega, A.A. Demkov, D.G. Trabada, B. Haycock, H. Wang, G. Adams, J.K. Tomfohr, E. Abad, H. Wang, D.A. Drabold
    Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism
    physica status solidi (b) 248 (2011) 1989-2007.