1. X. Liu, A. Matěj, T. Kratky, J.I. Mendieta-Moreno, S. Günther, P. Mutombo, S. Decurtins, U. Aschauer, J. Repp, P. Jelínek, Sh. Liu, L.L. Patera
    Exploiting Cooperative Catalysis for the On-surface Synthesis ofLinear Heteroaromatic Polymers via Selective C-H Activation
    Angewandte Chemie International Edition 61 (2022) e20211279(1)-e20211279(6).
  2. J.W. Park, E. Do, J.S. Shin, S. K. Song, O. Stetsovych, P. Jelínek, H.W.Yeom
    Creation and annihilation of mobile fractional solitons in atomic chains
    Nature Nanotechnology 17 (2022) 244-249.
  3. Zh. Zeng, D. Guo, T. Wang, Q. Chen, A. Matěj, J. Huang, D. Han, Q. Xu, A. Zhao, P. Jelínek, D.G. de Oteyza, J.-S. McEwen, J. Zhu
    Chemisorption-Induced Formation of Biphenylene Dimer on Ag(111)
    Journal of the American Chemical Society 144 (2022) 723-732.
  4. F. Evers, A. Aharony, N. Bar-Gill, O. Entin-Wohlman, P. Hedegård, O. Hod, P. Jelínek, G. Kamieniarz, M. Lemeshko, K. Michaeli, V. Mujica, R. Naaman, Y. Paltiel, S. Refaely-Abramson, O. Tal, J. Thijssen, M. Thoss, J.M. van Ruitenbeek, L. Venkataraman, D. H. Waldeck, B. Yan, L. Kronik
    Theory of Chirality Induced Spin Selectivity: Progress and Challenges
    Advanced Materials 34, (2022) 2106629(1)-2106629(11).
  5. K. Biswas, J.I. Urgel, M. R. Ajayakumar, J.Ma, A. Sánchez-Grande, S. Edalatmanesh, K. Lauwaet, P. Mutombo, J.M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    Synthesis and Characterization of peri-Heptacene on a Metallic Surface
    Angewandte Chemie International Edition 61 (2022) e2021149-1- e2021149-5.
  6. E. Do, J.W. Park, O. Stetsovych, P. Jelínek, H. Woong
    Z3 Charge Density Wave of Silicon Atomic Chains on a Vicinal Silicon Surface
    ACS Nano 16 (2022) 6598- 6604.
  7. H. Fang, A. J. Gallardo Caparrós, D. Dulal, Zh. Qiu, J. Su, M. Telychko, H. Mahalingam, P. Lyu, Y. Han, Y. Zheng, Y. Cai, A. Rodin, P. Jelínek, J. Lu
    Electronic Self-Passivation of Single Vacancy in Black Phosphorus via Ionization
    Physical Review Letters 128 (2022) 176801(1)-176801(6).
  8. M. Telychko, S. Edalatmanesh, K. Leng, I. Abdelwahab, N. Guo, Ch. Zhang, J.I. Mendieta-Moreno, M. Nachtigall, J. Li, K.P. Loh, P. Jelínek, J. Lu
    Sub-angstrom noninvasive imaging of atomic arrangement in 2D hybrid perovskites
    Science Advances 8 (2022) eabj0395(1)-eabj0395(8).
  9. K. Biswas, M. Urbani, A. Sánchez Grande, D. Soler Polo, K. Lauwaet, A. Matěj, P. Mutombo, L. Veis, J. Brabec, K. Pernal, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, T. Torres, J.I. Urgel
    Interplay between π-Conjugation and Exchange Magnetism in One-Dimensional Porphyrinoid Polymers
    Journal of the American Chemical Society 144 (2022) 12725-12731.
  10. Ch. Wäckerlin, A. Cahlík, J. Goikoetxea, O. Stetsovych, D. Kývala, J. R. López Roso Redondo, M. Švec, B. Delley, M. Ondráček, A. Pinar Solé, M. Blanco-Rey, J. Kolorenč, A. Arnau, P. Jelínek
    Role of the Magnetic Anisotropy in Atomic-Spin Sensing of 1D Molecular Chains
    ACS Nano 16 (2022) 16402-16413.
  11. J. I. Mendieta-Moreno, B. J. Mallada Faes, B. De La Torre Cerdeño, T. Cadart, M. Kotora, P. Jelínek
    Unusual Scaffold Rearrangement in Polyaromatic Hydrocarbons Driven by Concerted Action of Single Gold Atoms on a Gold Surface
    Angewandte Chemie International Edition 61 (2022) e202208010-1-e202208010-6.
  12. J. Lawrence, A. Berdonces-Layunta, S. Edalatmanesh, J. Castro-Esteban, T. Wang, A. Jimenez-Martin, B. De La Torre Cerdeño, R. Castrillo-Bodero, P. Angulo-Portugal, M.S.G. Mohammed, A. Matěj, M. Vilas-Varela, F. Schiller, M. Corso, P. Jelínek, D. Peña, D.G. de Oteyza
    Circumventing the stability problems of graphene nanoribbon zigzag edges
    Nature Chemistry 14 (2022) 1451-1458 .
  13. B. Lowe, J. Hellerstedt, A. Matěj, P. Mutombo, D. Kumar, M. Ondráček, P. Jelínek, A. Schiffrin
    Selective Activation of Aromatic C−H Bonds Catalyzed by Single Gold Atoms at Room Temperature
    Journal of the American Chemical Society 144 (2022) 21389-21397.
  14. B. J. Mallada Faes, Q. Chen, T. Chutora, A. Sánchez-Grande, B. Cirera, J. Santos, N. Martín, D. Ecija, P. Jelínek, B. De La Torre Cerdeño
    Resolving Atomic-Scale Defects in Conjugated Polymers On-Surfaces
    Chemistry-A European Journal 28 (2022) 1-9.
  15. K. Biswas, L. Yang, J. Ma, A. Sánchez-Grande, Q. Chen, K. Lauwaet, J. M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    Defect-Induced π-Magnetism into Non-Benzenoid Nanographenes
    Nanomaterials 12 (2022) 12020224(1)-12020224(9).
  16. W. Kaminski, W. Rozsíval, P. Jelínek
    Theoretical study of electronic and transport properties of PPy-Pt(111) and PPy-C(111):H interfaces
    Journal of Physics: Condensed Matter 22 (2010) 045003(1)-045003(10).
  17. S. Lindsay, J. He, O. Sankey, P. Hapala, P. Jelínek, P. Zhang, S.Chang, S. Huang
    Recognition tunneling
    Nanotechnology 21 (2010) 262001(1)-262001(12).
  18. C.Sánchez-Sánchez, C.González, P. Jelínek, J.Méndez, P.L.deAndres, J.A. Martín-Gago, M.F. López
    Understanding atomic-resolved STM images on TiO.2.(110)-(1x1) surface by DFT calculations.
    Nanotechnology 21 (2010) 405702(1)-405702(10).
  19. H. Vázquez, P. Jelínek, M. Brandbyge, A.P. Jauho, F. Flores
    Corrections to the density-functional theory electronic spectrum: copper phthalocyanine.
    Applied Physics A-Materials Science & Processing 95 (2009) 257-263.
  20. M. Švec, V. Dudr, M. Vondráček, P. Jelínek, P. Mutombo, V. Cháb, F. Šutara, V. Matolín, K. Prince
    Intra-atomic charge re-organization at the Pb Si interface: Bonding mechanism at low cover.
    Surface Science 603 (2009) 2861-2869.
  21. P. Pou, S.A. Ghasemi, P. Jelínek, T. Lenosky, S. Goedecker, R. Perez
    Structure and stability of semiconductor tip apexes for atomic force microscopy.
    Nanotechnology 20 (2009) 264015-1-264015-10.
  22. R. Bechstein, C. González, J. Schütte, P. Jelínek, R. Pérez, A. Kühnle
    'All-inclusive' imaging of the rutile TiO.2.(110) surface using NC-AFM.
    Nanotechnology 20 (2009) 505703(1)-505703(7).
  23. K. Košmider, A. Krupski, P. Jelínek, L. Jurczyszyn
    Atomic and electronic properties of the Pb/Mo(110) adsorption system.
    Physical Review B 80 (2009) 115424(1)-115424(7).
  24. S. Sadewasser, P. Jelínek, Ch.K. Fang, O.Custance, Y. Yamada, Y.Sugimoto, M.Abe, S.Morita
    New Insights on Atomic-Resolution Frequency-Modulation Kelvin-Probe Force-Microscopy Imaging of Semiconductors.
    Physical Review Letters 103 (2009) 266103(1)-266103(4).
  25. P. Pou, P. Jelínek, R. Pérez
    Basic Mechanisms for Single Atom Manipulation in Semiconductor Systems with the FM-AFM.
    Chapter 11 in Noncontact Atomic Force Microscopy, eds. S.Morita, F.J. Giessibl, R. Wiesendanger, in series NanoScience and Technology, vol. 2, Springer-Verlag Berlin Heidelberger 2009 pp. 227-248.
  26. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  27. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  28. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  29. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  30. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403