1. K. Biswas, J.I. Urgel, A. Sánchez-Grande, S. Edalatmanesh, J. Santos, B. Cirera, P. Mutombo, K. Lauwaet, R. Miranda, P. Jelínek, N. Martín, D. Écija
    On-surface synthesis of doubly-linked one-dimensional pentacene ladder polymers
    Chemical Communications 56 (2020) 15309-15312.
  2. T. Michnowicz, B. Borca, R. Pétuya, V. Schendel, M. Pristl, I. Pentegov, U. Kraft, H. Klauk, P. Wahl, P. Mutombo, P. Jelínek, A. Arnau, U. Schlickum, K. Kern
    Controlling Single Molecule Conductance by a Locally Induced Chemical Reaction on Individual Thiophene Units
    Angewandte Chemie International Edition 59 (2020) 6207 -6212.
  3. J. Berger, M. Ondráček, O. Stetsovych, P. Malý, P. Holý, J. Rybáček, M. Švec, I.G. Stará, T. Mančal, I. Starý, P. Jelínek
    Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
    Nature Communications 11 (2020) 1337-1-1337-10.
  4. B. J. Mallada Faes, S. Edalatmanesh, P. Lazar, J. R. López Roso Redondo, A. J. Gallardo Caparrós, R. Zbořil, P. Jelínek, M. Švec, B. De La Torre Cerdeño
    Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene
    ACS Sustainable Chemistry & Engineering 8 (2020) 3437-3444.
  5. B. Cirera, A. Sánchez-Grande, B. De La Torre Cerdeño, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, B. J. Mallada Faes, R. Zbořil, R. Miranda, O. Gröning, P. Jelínek, N. Martín, D. Ecija
    Tailoring topological order and π-conjugation to engineer quasi-metallic polymers
    Nature Nanotechnology 15 (2020) 437-443.
  6. P. Procházka, M. A. Gosalvez, L. Kormoš, B. De La Torre Cerdeño, A. J. Gallardo Caparrós, J. Alberdi-Rodriguez, T. Chutora, A. O. Makoveev, A. Shahsavar, A. Arnau, P. Jelínek, J. Čechal
    Multiscale Analysis of Phase Transformations in Self-Assembled Layers of 4,4′-Biphenyl Dicarboxylic Acid on the Ag(001) Surface
    ACS Nano 14 (2020) 7269-7279.
  7. D. Sen, P. Blonski, B. De La Torre Cerdeño, P. Jelínek, M. Otyepka
    Thermally induced intra-molecular transformation and metalation of free-base porphyrin on Au(111) surface steered by surface confinement and ad-atoms
    Nanoscale Advances 2 (2020) 2986-2991.
  8. J. Doležal, P. Mutombo, D. Nachtigallova, P. Jelínek, P. Merino, M. Švec
    Mechano-Optical Switching of a Single Molecule with Doublet Emission
    ACS Nano 14 (2020) 8931-8938.
  9. Ch. Wäckerlin, A. J. Gallardo Caparrós, A. Mairena, M. Baljozovic, A. Cahlík, A. Antalík, J. Brabec, L. Veis, D. Nachtigallova, P. Jelínek, K.-H. Ernst
    On-Surface Hydrogenation of Buckybowls: From Curved Aromatic Molecules to Planar Non-Kekulé Aromatic Hydrocarbons
    ACS Nano 14 (2020) 16735-16742.
  10. A. Sánchez-Grande, J.I. Urgel, A. Cahlík, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, P. Mutombo, D. Nachtigallová, R. Nieman, H. Lischka, B. De La Torre Cerdeño, R. Miranda, O. Gröning, N. Martín, P. Jelínek, D. Écija
    Diradical organic one‐dimensional polymers synthesized on a metallic surface
    Angewandte Chemie International Edition 59 (2020) 17594-17599 .
  11. M.S.G. Mohammed, L. Colazzo, A. J. Gallardo Caparrós, J.A. Pomposo, P. Jelínek, D.G. de Oteyza
    Steering alkyne homocoupling with on-surface synthesized metal–organic complexes
    Chemical Communications 56 (2020) 8659-8662.
  12. B. De La Torre Cerdeño, A. Matěj, A. Sánchez-Grande, B. Cirera, B. J. Mallada Faes, E. Rodríguez-Sánchez, J. Santos, J.I. Mendieta-Moreno, S. Edalatmanesh, K. Lauwaet, M. Otyepka, M. Medveď, Á. Buendía, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Tailoring π-conjugation and vibrational modes to steer on-surface synthesis of pentalene-bridged ladder polymers
    Nature Communications 11 (2020) 4567(1)-4567(8).
  13. A. Campbellová, M. Ondráček, P. Pou, R. Pérez, P. Klapetek, P. Jelínek
    'Sub-atomic' resolution of non-contact atomic force microscope images induced by a heterogeneous tip structure: a density functional theory study
    Nanotechnology 22 (2011) 295710(1)-295710(7).
  14. Z. Majzik, W. Kamiński, A.J. Weymouth, M. Vondráček, V. Zobač, M. Švec, A. Berkó, A.B. McLean, K.C. Prince, P. Jelínek, V. Cháb
    An Investigation of Ethylene Attachment to Si(111)–7 x 7 in the Restatom–Adatom Bridging Geometry: Electronic and Vibrational Properties
    Journal of Physical Chemistry C 115 (2011) 21791-21799.
  15. M. Ondráček, P. Pou, V. Rozsíval, C. González, P. Jelínek, R. Pérez
    Forces and Currents in Carbon Nanostructures: Are We Imaging Atoms?
    Physical Review Letters 106 (2011) 176101(1)-176101(4).
  16. M. Ternes, C. González, Ch. P. Lutz, P. Hapala, F.J. Giessibel, P. Jelínek, A.J. Heinrich
    Interplay of Conductance, Force, and Structural Change in Metallic Point Contacts.
    Physical Review Letters 106 (2011) 016802(1)-016802(4).
  17. J.P. Lewis, P. Jelínek, J. Ortega, A.A. Demkov, D.G. Trabada, B. Haycock, H. Wang, G. Adams, J.K. Tomfohr, E. Abad, H. Wang, D.A. Drabold
    Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism
    physica status solidi (b) 248 (2011) 1989-2007.
  18. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  19. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  20. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  21. N.Oyabu, P.Pou, Y.Sugimoto, P. Jelínek, M.Abe, S.Morita, R.Pérez, Ó.Custance
    Single atomic contact adhesion and dissipation in dynamic force microscopy
    Physical Review Letters 96 č.10 (2006) 106101/1-106101/4.
  22. P. Jelínek, R.Pérez, J.Ortega, F.Flores
    Hydrogen dissociation over Au nanowires and the fractional conductance quantum
    Physical Review Letters 96, č.4 (2006) 046803/1-046803/4.
  23. Y.Sugimoto, P.Pou, O.Custance, P. Jelínek, S.Morita, R.Peréz, M.Abe.
    Real topography, atomic relaxations and short-range chemical interactions in atomic force microscopy: The case of the α-Sn/Si(111)-(√3 x √3) R30o surface.
    Physical Review B 73 (2006) 205329-1-205329-9.