1. Sh. Song, A. Pinar Solé, A. Matěj, G. Li, O. Stetsovych, D. Soler, H. Yang, M. Telychko, J. Li, M. Kumar, Q. Chen, S. Edalatmanesh, J. Brabec, L. Veis, J. Wu, P. Jelínek, J. Lu
    Highly entangled polyradical nanographene with coexisting strong correlation and topological frustration
    Nature Chemistry 0 (2024) 1-5.
  2. A. Berdonces-Layunta, A. Matěj, A. Jiménez-Martín, J. Lawrence, M.S.G. Mohammed, T. Wang, B. J. Mallada Faes, B. De La Torre Cerdeño, A. Martínez, M. Vilas-Varela, R. Nieman, H. Lischka, D. Nachtigallová, D.Peña, P. Jelínek, D. G. de Oteyza
    The effect of water on gold supported chiral graphene nanoribbons: rupture of conjugation by an alternating hydrogenation pattern
    Nanoscale 16 (2024) 734-741.
  3. K. Biswas, Q. Chen, S. Obermann, J. Ma, D. Soler‐Polo, J. Melidonie, A. Barragán, A. Sánchez‐Grande, K. Lauwaet, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    On‐Surface Synthesis of Non‐Benzenoid Nanographenes Embedding Azulene and Stone‐Wales Topologies
    Angewandte Chemie International Edition 63 (2024) e2023181-1- e2023181-9.
  4. L. Wang, X. Peng, J. Su, J. Wang, A. J. Gallardo Caparrós, H. Yang, Q. Chen, P. Lyu, P. Jelínek, J. Liu, M.W. Wong, J. Lu
    Highly Selective On-Surface Ring-Opening of Aromatic Azulene Moiety
    Journal of the American Chemical Society 146 (2024) 1563-1571.
  5. R. Zuzak, M. Kumar, O. Stoica, D. Soler-Polo, J. Brabec, K. Pernal, L. Veis, R. Blieck, A. M. Echavarren, P. Jelínek, S. Godlewski
    On-Surface Synthesis and Determination of the Open-Shell Singlet Ground State of Tridecacene
    Angewandte Chemie International Edition 63 (2024) 202317091(1)-202317091(8).
  6. A. Cahlík, M. Ondráček, Christian Wäckerlin, Andres Pinar Solé, Olivier Siri, M. Švec, P. Jelínek
    Light-Controlled Multiconfigurational Conductance Switching in a Single 1D Metal-Organic Wire
    ACS Nano 1 (2024) 1-9.
  7. F. Frezza, A. Matěj, A. Sánchez-Grande, M. Carrera, P. Mutombo, M. Kumar, D. Curiel, P. Jelínek
    On-Surface Synthesis of a Radical 2D Supramolecular Organic Framework
    Journal of the American Chemical Society 146 (2024) 3531-3538.
  8. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Physical Review B 95 (2017) 045407(1)-045407(9).
  9. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nature Communications 8 (2017) 15155(1)-15155(6).
  10. T. Chutora, J. R. López Roso Redondo, B. De La Torre Cerdeño, M. Švec, P. Jelínek, H. Vázquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein Journal of Nanotechnology 8 (2017) 1073-1079.
  11. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413-8420.
  12. B. De La Torre Cerdeño, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Physical Review Letters 119 (2017) 166001(1)-166001(6).
  13. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nature Chemistry 9 (2017) 213-218.
  14. A. Charvátová Campbell, P. Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Measurement Science and Technology 28 (2017) 034005(1)- 034005(6).
  15. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    Journal of Physics: Condensed Matter 29 (2017) 343002(1)- 343002(18).
  16. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  17. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  18. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  19. P. Jelínek, H. Wang, J. P. Lewis, O.F. Sankey, J.Ortega
    Multicenter approach to the exchange-correlation interactions in ab initio tight-binding methods
    Physical Review B 71 (2005) 235101(1)-235101(9).
  20. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    Universal behaviour in the final stage of the breaking process for metal nanowires
    Nanotechnology 16 (2005) 1023-1028.
  21. J. M. Blanco, C. González, P. Jelínek, J. Ortega, F. Flores, R. Pérez, M. Rose, M. Salmeron, J. Méndez, J. Wintterlin, G. Ertl
    Origin of contrast in STM images of oxygen on Pd(111) and its dependence on tip structure and tunneling parameters
    Physical Review B 71 (2005) 113402(1)-113402(4).
  22. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136
  23. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291
  24. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23
  25. J. M. Blanco, C. Gonzáles, P. Jelínek, J. Ortega, F. Flores, R. Peréz
    First-principles simulations of STM images: From tuneling to the contact regime.
    Phys. Rev. B 70 (2004) 85405
  26. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  27. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403