1. R. C. de Campos Ferreira, B. Cirera, J. Doležal, Á. Gallego de Roa, A. Sagwal, P. Kahan, R. Canales, F. Aguilar-Galindo, M. Švec, P. Merino
    Adsorption-Driven Symmetry Lowering in Single Molecules Revealed by Ångstrom-Scale Tip-Enhanced Raman Imaging
    Journal of the American Chemical Society 148 (2026) 9375-9381.
  2. R. C. de Campos Ferreira, A. Sagwal, J. Doležal, T. Neuman, M. Švec
    Disentangling the components of a multiconfigurational excited state in isolated chromophore with light-scanning-tunneling microscopy
    Nature Communications 16 (2025) 6039-.
  3. B. Cirera, A. Sáez-Coronado, D. Arribas, J. Méndez, A. Sagwal, R. C. de Campos Ferreira, M. Švec, P. Merino
    Upgrade of a variable temperature scanning tunneling microscope for nanometer-scale spectromicroscopy
    MethodsX 14 (2025) 103156-.
  4. E. Pérez-Elvira, F. Wu, J. H. Hwang, J. Ma, L. Palomino-Ruiz, S. Canola, A. Barragán, K. Lauwaet, J. M. Gallego, R. Miranda, M. L. Perrin, D. Écija, A. J. Gallardo Caparrós, G. Borin Barin, X. Feng, J. I. Urgel
    On-Surface Synthesis and Characterization of Cumulene-Linked Stone-Wales Polymers
    Angewandte Chemie International Edition 64 (2025) 202506803(1)-202506803(7).
  5. F. Frezza, A. Sánchez-Grande, S. Canola, Ch. Nacci, J. Klívar, P. Mutombo, Q. Chen, J.M. Gómez-Fernandez, C. Sánchez-Sánchez, J. Berger, K.-H. Ernst, I.G. Stará, J.A. Martín-Gago, I. Starý, L. Grill, P. Jelínek
    Photogeneration and Visualization of a Surface-Stabilized Dinitrene
    Angewandte Chemie International Edition 64 (2025) e202502640-1-e202502640-7.
  6. F. Frezza, P. Jelínek, S. Canola, A. Sánchez‐Grande
    Light‐Induced On‐Surface Reactions: Bridging Photochemistry and Surface Science
    ChemPlusChem 90 (2025) e202500476-e202500476.
  7. K. Vasilev, S. Canola, F. Scheurer, A. oeglin, F. Lotthammer, F. Cherioux, T. Neuman, G. Schull
    Exploring the Role of Excited States’ Degeneracy on Vibronic Coupling with Atomic-Scale Optics
    ACS Nano 18 (2024) 28052-28059.
  8. G. Tajuelo-Castilla, J.I. Mendieta-Moreno, M. Accolla, J.M. Sobrado, S. Canola, P. Jelínek, G.J. Ellis, J.Á. Martín-Gago, G. Santoro
    Photocleavage of Aliphatic C–C Bonds in the Interstellar Medium
    Astrophysical Journal 965 (2024) 184-1-184-20.
  9. Yoshiki Sugai, Vijay P. Rahane, Innes Gale, Carla Verdi, Alexander R. Ireland, S. Canola, Sarah K. M. McGregor, Evan G. Moore, Nidhi Jain, Ebinazar B. Namdas, Shih-Chun Lo
    End Cap Effect on Solution-Processable Deep Blue Lasing Materials with Low-Amplified Spontaneous Emission Thresholds
    ACS Applied Materials and Interfaces 16 (2024) 46506-46515.
  10. J. R. López Roso Redondo, M. Reticcioli, V. Gabriel, D. Wrana, F. Ellinger, M. Riva, G. Franceschi, E. Rheinfrank, I. Sokolović, Z. Jakub, F. Kraushofer, A. Alexander, E. Belas, L. L. Patera, J. Repp, M. Schmid, U. Diebold, G.S. Parkinson, C. Franchini, P. Kocan, M. Setvin
    Real-space investigation of polarons in hematite Fe2O3
    Science Advances 10 (2024) eadp7833-1-eadp7833-8.
  11. J. R. López Roso Redondo, J. Michalička, F. Kraushofer, G. Franceschi, B. Šmid, N. Kumar, O. Man, M. Blatnik, D. Wrana, B. J. Mallada Faes, M. Švec, G. S. Parkinson, M. Setvin, M. Riva, U. Diebold, J. Čechal
    Hematite α-Fe2O3(0001) in Top and Side View: Resolving Long-Standing Controversies about Its Surface Structure
    Advanced Materials Interfaces 10 (2024) 2300602-.
  12. A. Cahlík, M. Ondráček, Ch. Wäckerlin, A. Pinar Solé, O. Siri, M. Švec, P. Jelínek
    Light-Controlled Multiconfigurational Conductance Switching in a Single 1D Metal-Organic Wire
    ACS Nano 18 (2024) 9576-9583.
  13. J. Doležal, A. Sagwal, R. C. de Campos Ferreira, M. Švec
    Single-Molecule Time-Resolved Spectroscopy in a Tunable STM Nanocavity
    Nano Letters 24 (2024) 1629-1634.
  14. R, C. de Campos Ferreira, A. Sagwal, J. Doležal, S. Canola, P. Merino, T. Neuman, M. Švec
    Resonant Tip-Enhanced Raman Spectroscopy of a Single-Molecule Kondo System
    ACS Nano 18 (2024) 13164-13170.
  15. F. Frezza, A. Sánchez-Grande, S. Canola, A. Lamancová, P. Mutombo, Q. Chen, Ch. Wäckerlin, K.-H. Ernst, M. Muntwiler, N. Zema, M. Di Giovannantonio, D. Nachtigallová, P. Jelínek
    Controlling On-Surface Photoactivity: The Impact of π-Conjugation in Anhydride-Functionalized Molecules on a Semiconductor Surface
    Angewandte Chemie International Edition 63 (2024) e202405983(1)-e202405983(8).
  16. I. Cojocariu, A. Windischbacher, D. Baranowski, M. Jugovac, R. C. de Campos Ferreira, J. Doležal, M. Švec, J. M. Zamalloa‐Serrano, M. Tormen, L. Schio, L. Floreano, J. Dreiser, P. Puschnig, V. Feyer, C. M. Schneider
    Surface-Mediated Spin Locking and Thermal Unlocking in a 2D Molecular Array
    Advanced Science 10 (2023) 2300223-2300223.
  17. Pin Lyu, Joachim Sødequist, Xiaoyu Sheng, Zhizhan Qiu, Anton Tadich, Qile Li, Mark T Edmonds, Meng Zhao, J. R. López Roso Redondo, M. Švec, Peng Song, Thomas Olsen, Jiong Lu
    Gate-Tunable Renormalization of Spin-Correlated Flat-Band States and Bandgap in a 2D Magnetic Insulator
    ACS Nano 17 (2023) 15441-15448.
  18. J. Doležal, S. Canola, P. Hapala, R. C. de Campos Ferreira, P. Merino, M. Švec
    Real space visualization of entangled excitonic states in charged molecular assemblies
    ACS Nano 16 (2022) 1082-1088.
  19. J. Doležal, S. Canola, P. Hapala, R. C. de Campos Ferreira, P. Merino, M. Švec
    Evidence of exciton-libron coupling in chirally adsorbed single molecules
    Nature Communications 13 (2022) 6008-.
  20. J. Hellerstedt, A. Cahlík, M. Švec, O. Stetsovych, T. Hennen
    Counting molecules: Python based scheme for automated enumeration and categorization of molecules in scanning tunneling microscopy images
    Software Impacts 12 (2022) 100301(1)-100301(5).
  21. Ch. Wäckerlin, A. Cahlík, J. Goikoetxea, O. Stetsovych, D. Kývala, J. R. López Roso Redondo, M. Švec, B. Delley, M. Ondráček, A. Pinar, M. Blanco-Rey, J. Kolorenč, A. Arnau, P. Jelínek
    Role of the Magnetic Anisotropy in Atomic-Spin Sensing of 1D Molecular Chains
    ACS Nano 16 (2022) 16402-16413.
  22. V. M. Santhini, O. Stetsovych, M. Ondráček, J. I. Mendieta Moreno, P. Mutombo, B. De La Torre Cerdeño, M. Švec, J. Klívar, I. G. Stará, H. Vázquez, I. Starý, P. Jelínek
    On-Surface Synthesis of Polyferrocenylene and its Single-Chain Conformational and Electrical Transport Properties
    Advanced Functional Materials 31 (2021) 2006391(1)-2006391(11).
  23. M. Žonda, O. Stetsovych, R. Korytár, M. Ternes, R. Temirov, A. Raccanelli, F.S.Tautz, P. Jelínek, T. Novotný, M. Švec
    Resolving Ambiguity of the Kondo Temperature Determination in Mechanically Tunable Single-Molecule Kondo Systems
    Journal of Physical Chemistry Letters 12 (2021) 6320-6325.
  24. J. Doležal, S. Canola, P. Merino, M. Švec
    Exciton-Trion Conversion Dynamics in a Single Molecule
    ACS Nano 15 (2021) 7694-7699.
  25. J. Doležal, P. Merino, M. Švec
    Constant amplitude driving of a radio frequency excited plasmonic tunnel junction
    Applied Physics Letters 118 (2021) 193301-.
  26. A. Cahlík, J. Hellerstedt, Jesús I. Mendieta-Moreno, M. Švec, V. M. Santhini, S. Pascal, Diego Soler-Polo, S. I. Erlingsson, K. Výborný, P. Mutombo, O. Marsalek, O. Siri, P. Jelínek
    Significance Of Nuclear Quantum Effects In Hydrogen Bonded Molecular Chains
    ACS Nano 15 (2021) 10357-10365.
  27. J. Doležal, P. Mutombo, D. Nachtigallova, P. Jelínek, P. Merino, M. Švec
    Mechano-Optical Switching of a Single Molecule with Doublet Emission
    ACS Nano 14 (2020) 8931-8938.
  28. J. Berger, M. Ondráček, O. Stetsovych, P. Malý, P. Holý, J. Rybáček, M. Švec, I.G. Stará, T. Mančal, I. Starý, P. Jelínek
    Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
    Nature Communications 11 (2020) 1337-1-1337-10.
  29. B. J. Mallada Faes, Sh. Edalatmanesh, P. Lazar, J. R. López Roso Redondo, A. J. Gallardo Caparrós, R. Zbořil, P. Jelínek, M. Švec, B. De La Torre Cerdeño
    Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene
    ACS Sustainable Chemistry & Engineering 8 (2020) 3437-3444.
  30. J. Hellerstedt, A. Cahlík, O. Stetsovych, M. Švec, T. K. Shimizu, P. Mutombo, J. Klívar, I.G. Stará, P. Jelínek, I. Starý
    Aromatic Azide Transformation on the Ag(111) Surface Studied by Scanning Probe Microscopy
    Angewandte Chemie International Edition 58 (2019) 2266-2271.
  31. T. Chutora, B. De La Torre Cerdeño, P. Mutombo, J. Hellerstedt, J. Kopeček, P. Jelínek, M. Švec
    Nitrous oxide as an effective AFM tip functionalization: a comparative study
    Beilstein Journal of Nanotechnology 10 (2019) 315-321.
  32. J. R. López Roso Redondo, Petr Lazar, Pavel Procházka, Stanislav Prusa, Jan Lachnitt, B. J. Mallada Faes, A. Cahlík, J. Berger, Břetislav Šmíd, Lukáš Kormoš, P. Jelínek, Jan Čechal, M. Švec
    Identification of Two-dimensional FeO2 Termination of Bulk Hematite ɑ-Fe2O3(0001) Surface
    J. Phys. Chem. C 123 (2019) 14312
  33. J. Doležal, P. Merino, J. R. López Roso Redondo, L. Ondič, A. Cahlík, M. Švec
    Charge Carrier Injection Electroluminescence with CO-Functionalized Tips on Single Molecular Emitters
    Nano Letters 19 (2019) 8605-8611.
  34. B. De La Torre Cerdeño, M. Švec, P. Hapala, J. R. López Roso Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
    Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
    Nature Communications 9 (2018) 2831(1)-2831(9).
  35. M. Ondráček, P. Hapala, M. Švec, P. Jelínek
    Imaging Charge Distribution Within Molecules by Scanning Probe Microscopy
    Chapter 16 in Kelvin Probe Force Microscopy, eds. S. Sadewasser & T. Glatzel, Springer Series in Surface Sciences, vol. 65, Springer, Cham, 2018, pp. 499-518
  36. J. Hellerstedt, A. Cahlík, M. Švec, B. De La Torre Cerdeño, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelínek
    On-surface structural and electronic properties of spontaneously formed Tb2Pc3 single molecule magnets
    Nanoscale 10 (2018) 15553-15563.
  37. O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
    Large converse piezoelectric effect measured on a single molecule on a metallic surface
    Journal of the American Chemical Society 140 (2018) 940-946.
  38. J. R. López Roso Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
    Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
    Journal of Vacuum Science & Technology A 36 (2018) 031401-1-031401-6.
  39. N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo, M. Švec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
    On-Surface Bottom-Up Synthesis of Azine Derivatives DisplayingStrong Acceptor Behavior
    Angewandte Chemie International Edition 57 (2018) 8582-8586.
  40. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nature Chemistry 9 (2017) 213-218.
  41. T. Chutora, J. R. López Roso Redondo, B. De La Torre Cerdeño, M. Švec, P. Jelínek, H. Vázquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein Journal of Nanotechnology 8 (2017) 1073-1079.
  42. B. De La Torre Cerdeño, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Physical Review Letters 119 (2017) 166001(1)-166001(6).
  43. J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
    Structural and Electronic Properties of Nitrogen-Doped Graphene
    Physical Review Letters 116 (2016) 126805(1)-126805(6).
  44. N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelínek, I. Swart
    Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
    ACS Nano 10 (2016) 8517-8525.
  45. J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
    Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
    Journal of Physical Chemistry C 120 (2016) 21955-21961.
  46. P. Hapala, M. Švec, O. Stetsovych, N. J. van der Heijden, M. Ondráček, J. van der Lit, P. Mutombo, I. Swart, P. Jelínek
    Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
    Nature Communications 7 (2016) 11560(1)-11560(8).
  47. J. Sforzini, M. Telychko, O. Krejčí, M. Vondráček, M. Švec, F. C. Bocquet, F. S. Tautz
    Transformation of metallic boron into substitutional dopants in graphene on 6H-SIC(0001)
    Physical Review B 93 (2016) 041302-1-041302-4.
  48. Pablo Merino, M. Švec, Jose Ignacio Martinez, P. Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, P. Jelínek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233-239.
  49. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180-9187.
  50. P. Hapala, M. Ondráček, O. Stetsovych, M. Švec, P. Jelínek
    Simultaneous nc-AFM/STM Measurements with Atomic Resolution
    Noncontact Atomic Force Microscopy vol. 3