1. B. J. Mallada Faes, M. Ondráček, M. Lamanec, A. J. Gallardo Caparrós, A. Jiménez-Martín, B. De La Torre Cerdeño, P. Hobza, P. Jelínek
    Visualization of π-hole in molecules by means of Kelvin probe force microscopy
    Nature Communications 14 (2023) 4954 -4954 .
  2. F. Frezza, A. Sánchez-Grande, M. Ondráček, M. Vondráček, Q. Chen, O. Stetsovych, V. Villalobos-Vilda, E. Tosi, F. J. Palomares, M. F. López, C. Sánchez-Sánchez, K.-H. Ernst, J. A. Martín-Gago, J. Honolka, P. Jelínek
    Epitaxial growth and characterization of SnSe phases on Au(111)
    Journal of Physics: Condensed Matter 35 (2023) 335001(1)-335001(9).
  3. T. Wang, P. Angulo-Portugal, A. Berdonces-Layunta, A. Jancarik, A. Gourdon, J. Holec, M. Kumar, D. Soler, P. Jelínek, D. Casanova, M. Corso, D. G. de Oteyza, J. P. Calupitan
    Tuning the Diradical Character of Pentacene Derivatives via Non-Benzenoid Coupling Motifs
    Journal of the American Chemical Society 145 (2023) 10333-10341.
  4. X. Wu, B. Borca, S. Sen, S. Koslowski, S. Abb, D.P. Rosenblatt, A. J. Gallardo Caparrós, J.I. Mendieta-Moreno, M. Nachtigall, P. Jelínek, S. Rauschenbach, K. Kern, U. Schlickum
    Molecular sensitised probe for amino acid recognition within peptide sequences
    Nature Communications 14 (2023) 8335-1-8335-8.
  5. I. Palaci, M. Moreno, A. Nanez, A. Purwidyantri, T. Domingues, P. D. Cabral, J. Borme, M. Marciello, J. I. Mendieta-Moreno, B. Torres-Vazquez, J. I. Martínez, M. F. Lopez, M. García-Hernandez, L. Vazquez, P. Jelínek, P. Alpuim, C. Briones, J. A. Martín-Gago
    Attomolar detection of hepatitis C virus core protein powered by molecular antenna-like effect in a graphene field-effect aptasensor
    Biosensors and Bioelectronics 222 (2023) 115006(1)-115006(8).
  6. K. Biswas, D. Soler, S. Mishra, Q. Chen, X. Yao, A. Sánchez-Grande, K. Eimre, P. Mutombo, C. Martín-Fuentes, K. Lauwaet, J. M. Gallego, P. Ruffieux, C. A. Pignedoli, K. Müllen, R. Miranda, J. I. Urgel, A. Narita, R. Fasel, P. Jelínek, D. Écija
    Steering Large Magnetic Exchange Coupling in Nanographenes near the Closed-Shell to Open-Shell Transition
    Journal of the American Chemical Society 145 (2023) 2968-2974.
  7. F. Frezza, F. Schiller, A. Cahlík, J. E. Ortega, J. V. Barth, A. Arnau, M. Blanco-Rey, P. Jelínek, M. Corso, I. Piquero-Zulaica
    Electronic band structure of 1D π–d hybridized narrow-gap metal–organic polymers
    Nanoscale 15 (2023) 2285-2291.
  8. A. Jimenez-Martın, F. Villalobos, B. J. Mallada Faes, S. Edalatmanesh, A. Matěj, J. M. Cuerva, P. Jelínek, A. G. Campana, B. De La Torre Cerdeño
    On-surface synthesis of non-benzenoid conjugated polymers by selective atomic rearrangement of ethynylarenes
    Chemical Science 14 (2023) 1403-1412.
  9. E. C. Rascon, A. Riss, A. Matěj, A. Wiengarten, P. Mutombo, D. Soler, P. Jelínek, W. Auwärter
    On-Surface Synthesis of Square-Type Porphyrin Tetramers with Central Antiaromatic Cyclooctatetraene Moiety
    Journal of the American Chemical Society 145 (2023) 967-977.
  10. P. Jelínek
    Quantum spin chains go organic
    Nature Chemistry 15 (2023) 12-13.
  11. E. Pérez-Elvira, A. Barragán, Q. Chen, D. Soler-Polo, A. Sánchez-Grande, D. J. Vicent, K. Lauwaet, J. Santos, P. Mutombo, J. I. Mendieta-Moreno, B. De La Torre Cerdeño, J. M. Gallego, R Miranda, N. Martín, P. Jelínek, J. I. Urgel, D. Écija
    Generating antiaromaticity in polycyclic conjugated hydrocarbons by thermally selective skeletal rearrangements at interfaces
    Nature Synthesis 1 (2023) 1005-1016.
  12. Pablo Merino, M. Švec, Jose Ignacio Martinez, P. Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, P. Jelínek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233-239.
  13. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    Journal of Physics: Condensed Matter 27 (2015) 175002(1)-175002(11).
  14. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelínek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    Journal of Physics: Condensed Matter 27 (2015) 134208(1)-134208(11).
  15. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Letters 15 (2015) 4356-4363.
  16. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nature Communications 6 (2015) 7766(1)-7766(6).
  17. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Physical Review Letters 115 (2015) 076101-1-076101-5.
  18. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686-3693.
  19. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Physical Review Letters 115 (2015) 136101(1)-136101(5).
  20. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180-9187.
  21. Mykola Telychko, J. Berger, Zsolt Majzik, P. Jelínek, M. Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein Journal of Nanotechnology 6 (2015) 901-906.
  22. Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
    Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
    ACS Nano 7 (2013) 2686-2692.
  23. J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
    Characterization of the mechanical properties of qPlus sensors
    Beilstein Journal of Nanotechnology 4 (2013) 1-9.
  24. A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
    Physical Review B 87 (2013) 155403(1)-155403(10).
  25. E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
    Calculation of non-adiabatic coupling vectors in a local-orbital basis set
    Journal of Chemical Physics 138 (2013) 154106(1)-154106(8).
  26. P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
    Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
    Physical Review B 87 (2013) 195420(1)-195420(13).
  27. A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
    Atomic Structure Affects the Directional Dependence of Friction
    Physical Review Letters 111 (2013) 126103(1)-126103(4).
  28. Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
    Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
    Physical Review Letters 111 (2013) 106803(1)-106803(5).
  29. Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
    ACS Nano 7 (2013) 7370-7376.
  30. P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
    Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
    Physical Review B 88 (2013) 205406(1)-205406(7).
  31. Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
    Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
    Journal of Physics: Condensed Matter 25 (2013) 225301(1)- 225301(6).
  32. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  33. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  34. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  35. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  36. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403