1. X. Liu, A. Matěj, T. Kratky, J.I. Mendieta-Moreno, S. Günther, P. Mutombo, S. Decurtins, U. Aschauer, J. Repp, P. Jelínek, Sh. Liu, L.L. Patera
    Exploiting Cooperative Catalysis for the On-surface Synthesis ofLinear Heteroaromatic Polymers via Selective C-H Activation
    Angewandte Chemie International Edition 61 (2022) e20211279(1)-e20211279(6).
  2. J.W. Park, E. Do, J.S. Shin, S. K. Song, O. Stetsovych, P. Jelínek, H.W.Yeom
    Creation and annihilation of mobile fractional solitons in atomic chains
    Nature Nanotechnology 17 (2022) 244-249.
  3. Zh. Zeng, D. Guo, T. Wang, Q. Chen, A. Matěj, J. Huang, D. Han, Q. Xu, A. Zhao, P. Jelínek, D.G. de Oteyza, J.-S. McEwen, J. Zhu
    Chemisorption-Induced Formation of Biphenylene Dimer on Ag(111)
    Journal of the American Chemical Society 144 (2022) 723-732.
  4. F. Evers, A. Aharony, N. Bar-Gill, O. Entin-Wohlman, P. Hedegård, O. Hod, P. Jelínek, G. Kamieniarz, M. Lemeshko, K. Michaeli, V. Mujica, R. Naaman, Y. Paltiel, S. Refaely-Abramson, O. Tal, J. Thijssen, M. Thoss, J.M. van Ruitenbeek, L. Venkataraman, D. H. Waldeck, B. Yan, L. Kronik
    Theory of Chirality Induced Spin Selectivity: Progress and Challenges
    Advanced Materials 34, (2022) 2106629(1)-2106629(11).
  5. K. Biswas, J.I. Urgel, M. R. Ajayakumar, J.Ma, A. Sánchez-Grande, S. Edalatmanesh, K. Lauwaet, P. Mutombo, J.M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    Synthesis and Characterization of peri-Heptacene on a Metallic Surface
    Angewandte Chemie International Edition 61 (2022) e2021149-1- e2021149-5.
  6. E. Do, J.W. Park, O. Stetsovych, P. Jelínek, H. Woong
    Z3 Charge Density Wave of Silicon Atomic Chains on a Vicinal Silicon Surface
    ACS Nano 16 (2022) 6598- 6604.
  7. H. Fang, A. J. Gallardo Caparrós, D. Dulal, Zh. Qiu, J. Su, M. Telychko, H. Mahalingam, P. Lyu, Y. Han, Y. Zheng, Y. Cai, A. Rodin, P. Jelínek, J. Lu
    Electronic Self-Passivation of Single Vacancy in Black Phosphorus via Ionization
    Physical Review Letters 128 (2022) 176801(1)-176801(6).
  8. M. Telychko, S. Edalatmanesh, K. Leng, I. Abdelwahab, N. Guo, Ch. Zhang, J.I. Mendieta-Moreno, M. Nachtigall, J. Li, K.P. Loh, P. Jelínek, J. Lu
    Sub-angstrom noninvasive imaging of atomic arrangement in 2D hybrid perovskites
    Science Advances 8 (2022) eabj0395(1)-eabj0395(8).
  9. K. Biswas, M. Urbani, A. Sánchez Grande, D. Soler Polo, K. Lauwaet, A. Matěj, P. Mutombo, L. Veis, J. Brabec, K. Pernal, J.M. Gallego, R. Miranda, D. Écija, P. Jelínek, T. Torres, J.I. Urgel
    Interplay between π-Conjugation and Exchange Magnetism in One-Dimensional Porphyrinoid Polymers
    Journal of the American Chemical Society 144 (2022) 12725-12731.
  10. Ch. Wäckerlin, A. Cahlík, J. Goikoetxea, O. Stetsovych, D. Kývala, J. R. López Roso Redondo, M. Švec, B. Delley, M. Ondráček, A. Pinar Solé, M. Blanco-Rey, J. Kolorenč, A. Arnau, P. Jelínek
    Role of the Magnetic Anisotropy in Atomic-Spin Sensing of 1D Molecular Chains
    ACS Nano 16 (2022) 16402-16413.
  11. J. I. Mendieta-Moreno, B. J. Mallada Faes, B. De La Torre Cerdeño, T. Cadart, M. Kotora, P. Jelínek
    Unusual Scaffold Rearrangement in Polyaromatic Hydrocarbons Driven by Concerted Action of Single Gold Atoms on a Gold Surface
    Angewandte Chemie International Edition 61 (2022) e202208010-1-e202208010-6.
  12. J. Lawrence, A. Berdonces-Layunta, S. Edalatmanesh, J. Castro-Esteban, T. Wang, A. Jimenez-Martin, B. De La Torre Cerdeño, R. Castrillo-Bodero, P. Angulo-Portugal, M.S.G. Mohammed, A. Matěj, M. Vilas-Varela, F. Schiller, M. Corso, P. Jelínek, D. Peña, D.G. de Oteyza
    Circumventing the stability problems of graphene nanoribbon zigzag edges
    Nature Chemistry 14 (2022) 1451-1458 .
  13. B. Lowe, J. Hellerstedt, A. Matěj, P. Mutombo, D. Kumar, M. Ondráček, P. Jelínek, A. Schiffrin
    Selective Activation of Aromatic C−H Bonds Catalyzed by Single Gold Atoms at Room Temperature
    Journal of the American Chemical Society 144 (2022) 21389-21397.
  14. B. J. Mallada Faes, Q. Chen, T. Chutora, A. Sánchez-Grande, B. Cirera, J. Santos, N. Martín, D. Ecija, P. Jelínek, B. De La Torre Cerdeño
    Resolving Atomic-Scale Defects in Conjugated Polymers On-Surfaces
    Chemistry-A European Journal 28 (2022) 1-9.
  15. K. Biswas, L. Yang, J. Ma, A. Sánchez-Grande, Q. Chen, K. Lauwaet, J. M. Gallego, R. Miranda, D. Écija, P. Jelínek, X. Feng, J.I. Urgel
    Defect-Induced π-Magnetism into Non-Benzenoid Nanographenes
    Nanomaterials 12 (2022) 12020224(1)-12020224(9).
  16. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Physical Review B 95 (2017) 045407(1)-045407(9).
  17. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nature Communications 8 (2017) 15155(1)-15155(6).
  18. T. Chutora, J. R. López Roso Redondo, B. De La Torre Cerdeño, M. Švec, P. Jelínek, H. Vázquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein Journal of Nanotechnology 8 (2017) 1073-1079.
  19. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413-8420.
  20. B. De La Torre Cerdeño, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Physical Review Letters 119 (2017) 166001(1)-166001(6).
  21. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nature Chemistry 9 (2017) 213-218.
  22. A. Charvátová Campbell, P. Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Measurement Science and Technology 28 (2017) 034005(1)- 034005(6).
  23. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    Journal of Physics: Condensed Matter 29 (2017) 343002(1)- 343002(18).
  24. O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
    Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
    Journal of Physical Chemistry Letters 7 (2016) 1563-1569.
  25. P. Hapala, M. Švec, O. Stetsovych, N. J. van der Heijden, M. Ondráček, J. van der Lit, P. Mutombo, I. Swart, P. Jelínek
    Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
    Nature Communications 7 (2016) 11560(1)-11560(8).
  26. M. Ondráček, P. Hapala, P. Jelínek
    Charge-state dynamics in electrostatic force spectroscopy
    Nanotechnology 27 (2016) 274005(1)-274005(13).
  27. V. Zobač, J.P. Lewis, P. Jelínek
    Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
    Nanotechnology 27 (2016) 285202(1)-285202(8).
  28. K. Kůsová, P. Hapala, P. Jelínek, I. Pelant
    Band Structure of Silicon Nanocrystals
    Chapter 4 in "Silicon Nanophotonics. Basic Principles, Present Status, and Perspectives". Second Edition, ed. by L. Khriachtchev, Pan Stanford Publishing 2016, pp 109-144.
  29. N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelínek, I. Swart
    Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
    ACS Nano 10 (2016) 8517-8525.
  30. J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
    Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
    Journal of Physical Chemistry C 120 (2016) 21955-21961.
  31. J. van der Lit, F. Di Cicco, P. Hapala, P. Jelínek, I. Swart
    Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
    Physical Review Letters 116 (2016) 096102-1-096102-5.
  32. J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
    Structural and Electronic Properties of Nitrogen-Doped Graphene
    Physical Review Letters 116 (2016) 126805(1)-126805(6).
  33. N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
    Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
    Journal of the American Chemical Society 138 (2016) 5585-5593.
  34. W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
    Tuning the conductance of benzene-based single-molecule junctions
    Organic Electronics 34 (2016) 254-261.
  35. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    Journal of Physics: Condensed Matter 24 (2012) 084003(1)-084003(7).
  36. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    Journal of Physics: Condensed Matter 24 (2012) 084001(1)-084001(10).
  37. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein Journal of Nanotechnology 3 (2012) 249-259.
  38. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969-6976.
  39. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    Journal of Physics: Condensed Matter 24 (2012) 445003-445016.
  40. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelínek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Physical Review B 85 (2012) 125416(1)-125416(9).
  41. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Physical Review B 86 (2012) 121407(R)-121412(R).
  42. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  43. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  44. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  45. N.Oyabu, P.Pou, Y.Sugimoto, P. Jelínek, M.Abe, S.Morita, R.Pérez, Ó.Custance
    Single atomic contact adhesion and dissipation in dynamic force microscopy
    Physical Review Letters 96 č.10 (2006) 106101/1-106101/4.
  46. P. Jelínek, R.Pérez, J.Ortega, F.Flores
    Hydrogen dissociation over Au nanowires and the fractional conductance quantum
    Physical Review Letters 96, č.4 (2006) 046803/1-046803/4.
  47. Y.Sugimoto, P.Pou, O.Custance, P. Jelínek, S.Morita, R.Peréz, M.Abe.
    Real topography, atomic relaxations and short-range chemical interactions in atomic force microscopy: The case of the α-Sn/Si(111)-(√3 x √3) R30o surface.
    Physical Review B 73 (2006) 205329-1-205329-9.
  48. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136
  49. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291
  50. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23