1. K. Biswas, J.I. Urgel, A. Sánchez-Grande, S. Edalatmanesh, J. Santos, B. Cirera, P. Mutombo, K. Lauwaet, R. Miranda, P. Jelínek, N. Martín, D. Écija
    On-surface synthesis of doubly-linked one-dimensional pentacene ladder polymers
    Chemical Communications 56 (2020) 15309-15312.
  2. T. Michnowicz, B. Borca, R. Pétuya, V. Schendel, M. Pristl, I. Pentegov, U. Kraft, H. Klauk, P. Wahl, P. Mutombo, P. Jelínek, A. Arnau, U. Schlickum, K. Kern
    Controlling Single Molecule Conductance by a Locally Induced Chemical Reaction on Individual Thiophene Units
    Angewandte Chemie International Edition 59 (2020) 6207 -6212.
  3. J. Berger, M. Ondráček, O. Stetsovych, P. Malý, P. Holý, J. Rybáček, M. Švec, I.G. Stará, T. Mančal, I. Starý, P. Jelínek
    Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
    Nature Communications 11 (2020) 1337-1-1337-10.
  4. B. J. Mallada Faes, S. Edalatmanesh, P. Lazar, J. R. López Roso Redondo, A. J. Gallardo Caparrós, R. Zbořil, P. Jelínek, M. Švec, B. De La Torre Cerdeño
    Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene
    ACS Sustainable Chemistry & Engineering 8 (2020) 3437-3444.
  5. B. Cirera, A. Sánchez-Grande, B. De La Torre Cerdeño, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, B. J. Mallada Faes, R. Zbořil, R. Miranda, O. Gröning, P. Jelínek, N. Martín, D. Ecija
    Tailoring topological order and π-conjugation to engineer quasi-metallic polymers
    Nature Nanotechnology 15 (2020) 437-443.
  6. P. Procházka, M. A. Gosalvez, L. Kormoš, B. De La Torre Cerdeño, A. J. Gallardo Caparrós, J. Alberdi-Rodriguez, T. Chutora, A. O. Makoveev, A. Shahsavar, A. Arnau, P. Jelínek, J. Čechal
    Multiscale Analysis of Phase Transformations in Self-Assembled Layers of 4,4′-Biphenyl Dicarboxylic Acid on the Ag(001) Surface
    ACS Nano 14 (2020) 7269-7279.
  7. D. Sen, P. Blonski, B. De La Torre Cerdeño, P. Jelínek, M. Otyepka
    Thermally induced intra-molecular transformation and metalation of free-base porphyrin on Au(111) surface steered by surface confinement and ad-atoms
    Nanoscale Advances 2 (2020) 2986-2991.
  8. J. Doležal, P. Mutombo, D. Nachtigallova, P. Jelínek, P. Merino, M. Švec
    Mechano-Optical Switching of a Single Molecule with Doublet Emission
    ACS Nano 14 (2020) 8931-8938.
  9. Ch. Wäckerlin, A. J. Gallardo Caparrós, A. Mairena, M. Baljozovic, A. Cahlík, A. Antalík, J. Brabec, L. Veis, D. Nachtigallova, P. Jelínek, K.-H. Ernst
    On-Surface Hydrogenation of Buckybowls: From Curved Aromatic Molecules to Planar Non-Kekulé Aromatic Hydrocarbons
    ACS Nano 14 (2020) 16735-16742.
  10. A. Sánchez-Grande, J.I. Urgel, A. Cahlík, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, P. Mutombo, D. Nachtigallová, R. Nieman, H. Lischka, B. De La Torre Cerdeño, R. Miranda, O. Gröning, N. Martín, P. Jelínek, D. Écija
    Diradical organic one‐dimensional polymers synthesized on a metallic surface
    Angewandte Chemie International Edition 59 (2020) 17594-17599 .
  11. M.S.G. Mohammed, L. Colazzo, A. J. Gallardo Caparrós, J.A. Pomposo, P. Jelínek, D.G. de Oteyza
    Steering alkyne homocoupling with on-surface synthesized metal–organic complexes
    Chemical Communications 56 (2020) 8659-8662.
  12. B. De La Torre Cerdeño, A. Matěj, A. Sánchez-Grande, B. Cirera, B. J. Mallada Faes, E. Rodríguez-Sánchez, J. Santos, J.I. Mendieta-Moreno, S. Edalatmanesh, K. Lauwaet, M. Otyepka, M. Medveď, Á. Buendía, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Tailoring π-conjugation and vibrational modes to steer on-surface synthesis of pentalene-bridged ladder polymers
    Nature Communications 11 (2020) 4567(1)-4567(8).
  13. O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
    Large converse piezoelectric effect measured on a single molecule on a metallic surface
    Journal of the American Chemical Society 140 (2018) 940-946.
  14. J. Peng, J. Guo, P. Hapala, D. Cao, R. Ma, B. Cheng, L. Xu, M. Ondráček, P. Jelínek, E. Wang, Y. Jiang
    Weakly perturbative imaging of interfacial waterwith submolecular resolution by atomic forcemicroscopy
    Nature Communications 9 (2018) 122(1)-122(7).
  15. J. R. López Roso Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
    Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
    Journal of Vacuum Science & Technology A 36 (2018) 031401-1-031401-6.
  16. J. Peng, D. Cao, Z. He, J. Guo, P. Hapala, R. Ma, B. Cheng, J. Chen, W. J. Xie, X.-Zh. Li, P. Jelínek, L.-M. Xu, Y. Q. Gao, E.-G. Wang, Y. Jiang
    The effect of hydration number on the interfacial transport of sodium ions
    Nature 557 (2018) 701-705.
  17. J. Hellerstedt, A. Cahlík, M. Švec, B. De La Torre Cerdeño, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelínek
    On-surface structural and electronic properties of spontaneously formed Tb2Pc3 single molecule magnets
    Nanoscale 10 (2018) 15553-15563.
  18. C. Krull, M. Castelli, P. Hapala, D. Kumar, A. Tadich, M. Capsoni, M. T. Edmonds, J. Hellerstedt, S. A. Burke, P. Jelínek, A. Schiffrin
    Iron-based trinuclear metal-organic nanostructureson a surface with local charge accumulation
    Nature Communications 9 (2018) 3211(1)-3211(7).
  19. M. Ondráček, P. Hapala, M. Švec, P. Jelínek
    Imaging Charge Distribution Within Molecules by Scanning Probe Microscopy
    Chapter 16 in Kelvin Probe Force Microscopy, eds. S. Sadewasser & T. Glatzel, Springer Series in Surface Sciences, vol. 65, Springer, Cham, 2018, pp. 499-518
  20. N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo, M. Švec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
    On-Surface Bottom-Up Synthesis of Azine Derivatives DisplayingStrong Acceptor Behavior
    Angewandte Chemie International Edition 57 (2018) 8582-8586.
  21. B. De La Torre Cerdeño, M. Švec, P. Hapala, J. R. López Roso Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
    Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
    Nature Communications 9 (2018) 2831(1)-2831(9).
  22. F. Queck, O. Krejčí, P. Scheuerer, F. Bolland, M. Otyepka, P. Jelínek, J. Repp
    Bonding Motifs in Metal-Organic Compounds on Surfaces
    Journal of the American Chemical Society 140 (2018) 12884-12889.
  23. J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
    Initial and secondary oxidation products on the Si(111)-(7x7) surface identified by atomic force microscopy and first principles calculations
    Applied Physics Letters 104 (2014) 133107(1)-133107(4).
  24. K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
    Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
    Advanced Materials Interfaces 1 (2014) 1300042(1)-1300042(9).
  25. M. Švec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, J. A. Martín Gago, P. Jelínek
    Silicene versus two-dimensional ordered silicide: Atomic and electronic structure of Si-(√19×√19)R23.4◦/Pt(111)
    Physical Review B 89 (2014) 201412(1)-201412(5).
  26. M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. Švec
    Achieving High-Quality Single-Atom Nitrogen Doping of Graphene/SiC(0001) by Ion Implantation and Subsequent Thermal Stabilization
    ACS Nano 8 (2014) 7318-7324.
  27. E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. Švec, Z. Majzik, A. B. McLean, P. Jelínek
    Identification of Surface Defects and Subsurface Dopants in a Delta-Doped System Using Simultaneous nc-AFM/STM and DFT
    Journal of Physical Chemistry C 118 (2014) 15744-15753.
  28. P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
    Mechanism of high-resolution STM/AFM imaging with functionalized tips
    Physical Review B 90 (2014) 085421(1)-085421(9).
  29. P. Merino, M. Švec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
    Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
    Nature Communications 5 (2014) 3054(1)-3054(9).
  30. P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
    Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
    Physical Review Letters 113 (2014) 226101(1)-226101(5).
  31. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    Journal of Physics: Condensed Matter 24 (2012) 084003(1)-084003(7).
  32. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    Journal of Physics: Condensed Matter 24 (2012) 084001(1)-084001(10).
  33. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein Journal of Nanotechnology 3 (2012) 249-259.
  34. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969-6976.
  35. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    Journal of Physics: Condensed Matter 24 (2012) 445003-445016.
  36. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelínek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Physical Review B 85 (2012) 125416(1)-125416(9).
  37. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Physical Review B 86 (2012) 121407(R)-121412(R).
  38. H. Vázquez, P. Jelínek, M. Brandbyge, A.P. Jauho, F. Flores
    Corrections to the density-functional theory electronic spectrum: copper phthalocyanine.
    Applied Physics A-Materials Science & Processing 95 (2009) 257-263.
  39. M. Švec, V. Dudr, M. Vondráček, P. Jelínek, P. Mutombo, V. Cháb, F. Šutara, V. Matolín, K. Prince
    Intra-atomic charge re-organization at the Pb Si interface: Bonding mechanism at low cover.
    Surface Science 603 (2009) 2861-2869.
  40. P. Pou, S.A. Ghasemi, P. Jelínek, T. Lenosky, S. Goedecker, R. Perez
    Structure and stability of semiconductor tip apexes for atomic force microscopy.
    Nanotechnology 20 (2009) 264015-1-264015-10.
  41. R. Bechstein, C. González, J. Schütte, P. Jelínek, R. Pérez, A. Kühnle
    'All-inclusive' imaging of the rutile TiO.2.(110) surface using NC-AFM.
    Nanotechnology 20 (2009) 505703(1)-505703(7).
  42. K. Košmider, A. Krupski, P. Jelínek, L. Jurczyszyn
    Atomic and electronic properties of the Pb/Mo(110) adsorption system.
    Physical Review B 80 (2009) 115424(1)-115424(7).
  43. S. Sadewasser, P. Jelínek, Ch.K. Fang, O.Custance, Y. Yamada, Y.Sugimoto, M.Abe, S.Morita
    New Insights on Atomic-Resolution Frequency-Modulation Kelvin-Probe Force-Microscopy Imaging of Semiconductors.
    Physical Review Letters 103 (2009) 266103(1)-266103(4).
  44. P. Pou, P. Jelínek, R. Pérez
    Basic Mechanisms for Single Atom Manipulation in Semiconductor Systems with the FM-AFM.
    Chapter 11 in Noncontact Atomic Force Microscopy, eds. S.Morita, F.J. Giessibl, R. Wiesendanger, in series NanoScience and Technology, vol. 2, Springer-Verlag Berlin Heidelberger 2009 pp. 227-248.
  45. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  46. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  47. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  48. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136
  49. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291
  50. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23