1. B. J. Mallada Faes, M. Ondráček, M. Lamanec, A. J. Gallardo Caparrós, A. Jiménez-Martín, B. De La Torre Cerdeño, P. Hobza, P. Jelínek
    Visualization of π-hole in molecules by means of Kelvin probe force microscopy
    Nature Communications 14 (2023) 4954 -4954 .
  2. F. Frezza, A. Sánchez-Grande, M. Ondráček, M. Vondráček, Q. Chen, O. Stetsovych, V. Villalobos-Vilda, E. Tosi, F. J. Palomares, M. F. López, C. Sánchez-Sánchez, K.-H. Ernst, J. A. Martín-Gago, J. Honolka, P. Jelínek
    Epitaxial growth and characterization of SnSe phases on Au(111)
    Journal of Physics: Condensed Matter 35 (2023) 335001(1)-335001(9).
  3. T. Wang, P. Angulo-Portugal, A. Berdonces-Layunta, A. Jancarik, A. Gourdon, J. Holec, M. Kumar, D. Soler, P. Jelínek, D. Casanova, M. Corso, D. G. de Oteyza, J. P. Calupitan
    Tuning the Diradical Character of Pentacene Derivatives via Non-Benzenoid Coupling Motifs
    Journal of the American Chemical Society 145 (2023) 10333-10341.
  4. X. Wu, B. Borca, S. Sen, S. Koslowski, S. Abb, D.P. Rosenblatt, A. J. Gallardo Caparrós, J.I. Mendieta-Moreno, M. Nachtigall, P. Jelínek, S. Rauschenbach, K. Kern, U. Schlickum
    Molecular sensitised probe for amino acid recognition within peptide sequences
    Nature Communications 14 (2023) 8335-1-8335-8.
  5. I. Palaci, M. Moreno, A. Nanez, A. Purwidyantri, T. Domingues, P. D. Cabral, J. Borme, M. Marciello, J. I. Mendieta-Moreno, B. Torres-Vazquez, J. I. Martínez, M. F. Lopez, M. García-Hernandez, L. Vazquez, P. Jelínek, P. Alpuim, C. Briones, J. A. Martín-Gago
    Attomolar detection of hepatitis C virus core protein powered by molecular antenna-like effect in a graphene field-effect aptasensor
    Biosensors and Bioelectronics 222 (2023) 115006(1)-115006(8).
  6. K. Biswas, D. Soler, S. Mishra, Q. Chen, X. Yao, A. Sánchez-Grande, K. Eimre, P. Mutombo, C. Martín-Fuentes, K. Lauwaet, J. M. Gallego, P. Ruffieux, C. A. Pignedoli, K. Müllen, R. Miranda, J. I. Urgel, A. Narita, R. Fasel, P. Jelínek, D. Écija
    Steering Large Magnetic Exchange Coupling in Nanographenes near the Closed-Shell to Open-Shell Transition
    Journal of the American Chemical Society 145 (2023) 2968-2974.
  7. F. Frezza, F. Schiller, A. Cahlík, J. E. Ortega, J. V. Barth, A. Arnau, M. Blanco-Rey, P. Jelínek, M. Corso, I. Piquero-Zulaica
    Electronic band structure of 1D π–d hybridized narrow-gap metal–organic polymers
    Nanoscale 15 (2023) 2285-2291.
  8. A. Jimenez-Martın, F. Villalobos, B. J. Mallada Faes, S. Edalatmanesh, A. Matěj, J. M. Cuerva, P. Jelínek, A. G. Campana, B. De La Torre Cerdeño
    On-surface synthesis of non-benzenoid conjugated polymers by selective atomic rearrangement of ethynylarenes
    Chemical Science 14 (2023) 1403-1412.
  9. E. C. Rascon, A. Riss, A. Matěj, A. Wiengarten, P. Mutombo, D. Soler, P. Jelínek, W. Auwärter
    On-Surface Synthesis of Square-Type Porphyrin Tetramers with Central Antiaromatic Cyclooctatetraene Moiety
    Journal of the American Chemical Society 145 (2023) 967-977.
  10. P. Jelínek
    Quantum spin chains go organic
    Nature Chemistry 15 (2023) 12-13.
  11. E. Pérez-Elvira, A. Barragán, Q. Chen, D. Soler-Polo, A. Sánchez-Grande, D. J. Vicent, K. Lauwaet, J. Santos, P. Mutombo, J. I. Mendieta-Moreno, B. De La Torre Cerdeño, J. M. Gallego, R Miranda, N. Martín, P. Jelínek, J. I. Urgel, D. Écija
    Generating antiaromaticity in polycyclic conjugated hydrocarbons by thermally selective skeletal rearrangements at interfaces
    Nature Synthesis 1 (2023) 1005-1016.
  12. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Physical Review B 95 (2017) 045407(1)-045407(9).
  13. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nature Communications 8 (2017) 15155(1)-15155(6).
  14. T. Chutora, J. R. López Roso Redondo, B. De La Torre Cerdeño, M. Švec, P. Jelínek, H. Vázquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein Journal of Nanotechnology 8 (2017) 1073-1079.
  15. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413-8420.
  16. B. De La Torre Cerdeño, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Physical Review Letters 119 (2017) 166001(1)-166001(6).
  17. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nature Chemistry 9 (2017) 213-218.
  18. A. Charvátová Campbell, P. Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Measurement Science and Technology 28 (2017) 034005(1)- 034005(6).
  19. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    Journal of Physics: Condensed Matter 29 (2017) 343002(1)- 343002(18).
  20. A. Campbellová, M. Ondráček, P. Pou, R. Pérez, P. Klapetek, P. Jelínek
    'Sub-atomic' resolution of non-contact atomic force microscope images induced by a heterogeneous tip structure: a density functional theory study
    Nanotechnology 22 (2011) 295710(1)-295710(7).
  21. Z. Majzik, W. Kamiński, A.J. Weymouth, M. Vondráček, V. Zobač, M. Švec, A. Berkó, A.B. McLean, K.C. Prince, P. Jelínek, V. Cháb
    An Investigation of Ethylene Attachment to Si(111)–7 x 7 in the Restatom–Adatom Bridging Geometry: Electronic and Vibrational Properties
    Journal of Physical Chemistry C 115 (2011) 21791-21799.
  22. M. Ondráček, P. Pou, V. Rozsíval, C. González, P. Jelínek, R. Pérez
    Forces and Currents in Carbon Nanostructures: Are We Imaging Atoms?
    Physical Review Letters 106 (2011) 176101(1)-176101(4).
  23. M. Ternes, C. González, Ch. P. Lutz, P. Hapala, F.J. Giessibel, P. Jelínek, A.J. Heinrich
    Interplay of Conductance, Force, and Structural Change in Metallic Point Contacts.
    Physical Review Letters 106 (2011) 016802(1)-016802(4).
  24. J.P. Lewis, P. Jelínek, J. Ortega, A.A. Demkov, D.G. Trabada, B. Haycock, H. Wang, G. Adams, J.K. Tomfohr, E. Abad, H. Wang, D.A. Drabold
    Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism
    physica status solidi (b) 248 (2011) 1989-2007.
  25. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  26. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  27. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  28. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  29. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403