Molecules off equilibrium

Fluctuation theorems

Jarzynski identity

C. Bustamante , J. Liphardt , F. Ritort
Journal-ref: Physics Today, vol. 58 (2005) 43-48

Work probability distribution in single molecule experiments
Inequivalence of Statistical Ensembles in Single Molecule Measurements
Supurna Sinha , Joseph Samuel
Mechanical Stretching of Proteins: Calmodulin and Titin
Marek Cieplak
Simultaneous current-, force- and work function measurement with atomic resolution
On practical applicability of the Jarzynski relation in statistical mechanics: a pedagogical example
An experimental test of the Jarzynski equality in a mechanical experiment
F. Douarche (Phys-ENS), S. Ciliberto (Phys-ENS), A. Petrosyan (Phys-ENS), I. Rabbiosi (Phys-ENS)
Distribution of work in isothermal non-equilibrium processes
Unified Treatment of Quantum Fluctuation Theorem and Jarzynski Equality in Terms of microscopic reversibility
Inferring DNA sequences from mechanical unzipping: an ideal-case study
V. Baldazzi , S. Cocco , E. Marinari , R. Monasson
Estimate of the free energy difference in mechanical systems from work fluctuations: experiments and models
Frederic Douarche (Phys-ENS), Sergio Ciliberto (Phys-ENS), Artem Petrosyan (Phys-ENS)
Work distribution functions for hysteresis loops in a single-spin system
Nonequilibrium Potential Function of Chemically Driven Single Macromolecules via Jarzynski-Type Log-Mean-Exponential Work
Equilibrium free energies from fast-switching trajectories with large time steps
Wolfgang Lechner , Harald Oberhofer , Christoph Dellago , Phillip L. Geissler
Work probability distribution in systems driven out of equilibrium
Jarzynski equality for the Jepsen gas
I. Bena , C. Van den Broeck , R. Kawai
Journal-ref: Europhysics Letters 71, pp. 879-885 (2005).
Validity condition of the Jarzynski relation for a classical mechanical system
Jaeyoung Sung
Phys. Rev. E 56, 5018 (1997): Jarzynski - Equilibrium free-energy differences from...
Flaw of Jarzynski's equality when applied to systems with several degrees of freedom
Reply to comments by D.H.E. Gross
Christopher Jarzynski
Reply to Jarzynski's comment cond-mat/0509344
Force Unfolding Single RNAs: from Equilibrium to Far-from Equilibrium
Fei Liu , Zhong-can Ou-Yang
Entropy production along a stochastic trajectory and an integral fluctuation theorem
Udo Seifert
Journal-ref: Phys Rev Lett, 95, 040602, 2005
Work distribution and path integrals in general mean-field systems
Breakdown of the Jarzynski relation for an adiabatic stretching of an isotropic spring
Jaeyoung Sung
Note on cond-mat/0510119: Jarzynski equation for adiabatically stretched rotor
Markus Bier
Reversible Unfolding of Single RNA Molecules by Mechanical Force -- Liphardt et al. 292 (5517): 733 -- Science
Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality -- Liphardt et al. 296 (5574): 1832 -- Science
Calculating potentials of mean force and diffusion coefficients from nonequilibirum processes without Jarzynski's equality
Non-equilibrium work relations
Jorge Kurchan
Direct evaluation of large-deviation functions
Cristian Giardina' , Jorge Kurchan , Luca Peliti
Illustration of the Jarzynski nonequilibrium work relation for an ideal gas
Rhonald C. Lua
Work-probability distribution in systems driven out of equilibrium
Unified treatment of the quantum fluctuation theorem and the Jarzynski equality in terms of microscopic reversibility
Fluctuations of work from quantum subensembles: The case against quantum work-fluctuation theorems
Fluctuation and dissipation of work in a Joule experiment
Work distribution functions in polymer stretching experiments
A simple proof of the Jarzynski equality?
Frédéric Douarche (Phys-ENS)
Reply to Note on cond-mat/0510270: Jarzynski equation for adiabatically stretched rotor
Jaeyoung Sung
Non-equilibrium thermodynamics of small-scale systems
J.M. Rubi
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
D. Collin , F. Ritort , C. Jarzynski , S. B. Smith , I. Tinoco , C. Bustamante
Journal-ref: Nature, vol. 437 (2005) 231-234
A possible generalized form of Jarzynski equality
Z. C. Tu , Zicong Zhou
A one-dimensional model for theoretical analysis of single molecule experiments
Erik Van der Straeten , Jan Naudts
Fluctuation Theorems of Brownian Particles Controlled by a Maxwell's Demon
Kyung Hyuk Kim , Hong Qian
Time-symmetric fluctuations in nonequilibrium systems
Christian Maes , Maarten H. van Wieren
Evaluation of free energy landscapes from manipulation experiments
Heat Fluctuations in Brownian Transducers
A. Gomez-Marin , J.M. Sancho
Journal-ref: Phys. Rev. E 73, 045101(R) (2006)
Fluctuation symmetries for work and heat
Marco Baiesi , Tim Jacobs , Christian Maes , Nikos S. Skantzos
Inequivalence of statistical ensembles in single molecule measurements
Three-dimensional bead position histograms reveal single-molecule nanomechanics
Probability distributions of the work in the 2D-Ising model
Christophe Chatelain (LPM), Dragi Karevski (LPM)
A proof of Jarzynski's non-equilibrium work theorem for dynamical systems that conserve the canonical distribution
Elisabeth Scholl-Paschinger , Christoph Dellago
Work fluctuations for a Brownian particle between two thermostats
Paolo Visco
Path-integral analysis of fluctuation theorems for general Langevin processes
Vladimir Y. Chernyak (Wayne State), Michael Chertkov (LANL), Christopher Jarzynski (LANL)
Heat fluctuations in Brownian transducers
Rare events and the convergence of exponentially averaged work values
Fluctuation theorems for quantum master equations
[cond-mat/0606361] Thermodynamics for single-molecule stretching experiments
[cond-mat/0607575] Validation of the Jarzynski relation for a system with strong thermal coupling: an isothermal ideal gas model
[cond-mat/0609085] Jarzynski Equality with Maxwell's Demon
[cond-mat/0611078] The distribution function of entropy flow in stochastic systems
[cond-mat/0611516] A charged particle in a magnetic field - Jarzynski Equality
[cond-mat/0612021] Non-equilibrium work fluctuations for oscillators in non-Markovian baths
[cond-mat/0612305] Comparison of far-from-equilibrium work relations
[cond-mat/0612527] Failure of the Jarzynski identity for a simple quantum system
[cond-mat/0612423] Asymmetry of the work probability distribution
[cond-mat/0701003] Comment on "Failure of the Jarzynski identity for a simple quantum system"
[cond-mat/0701303] Work Fluctuations and Stochastic Resonance
[cond-mat/0702044] Temperature-extended Jarzynski relation: Application to the numerical calculation of the surface tension
[cond-mat/0703189] Fluctuation theorems: Work is not an observable
[0705.1945] The Jarzynski equality. Thermodynamic analysis and microscopic foundations
[0706.1994] On the Quantum Jarzynski Identity
[0706.3749] Quantum Operation Time Reversal


Breakdown of Gallavotti-Cohen symmetry for stochastic dynamics
R. J. Harris , A. Rákos , G. M. Schuetz
Fluctuation theorem for currents and Schnakenberg network theory
David Andrieux , Pierre Gaspard
Fluctuation theorem for constrained equilibrium systems
T. Gilbert , J. R. Dorfman
Fluctuation theorem applied to the Nos\'e-Hoover thermostated Lorentz gas
Thomas Gilbert
Fluctuation theorems for quantum master equations
Massimiliano Esposito , Shaul Mukamel
Nonequilibrium statistical mechanics and entropy production in a classical infinite system of rotators
[cond-mat/0606477] Entropy, Nonequilibrium, Chaos and Infinitesimals
[cond-mat/0606690] Entropy, Thermostats and Chaotic Hypothesis
[cond-mat/0612019] Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence
[cond-mat/0612260] Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state
[cond-mat/0612397] Gallavotti-Cohen theorem, Chaotic Hypothesis and the zero-noise limit
[physics/0612167] Fluctuation theorem for entropy production during effusion of an ideal gas with momentum transfer
[cond-mat/0701124] Quantum Nonequilibrium and Entropy creation
[cond-mat/0702376] Fluctuation theorem for counting-statistics in electron transport through quantum junctions
[cond-mat/0702553] Fluctuation theorems for stochastic dynamics
[cond-mat/0703254] A novel fluctuation relation for a L\'evy particle
[cond-mat/0703347] Quantum fluctuation theorem: Can we go from micro to meso?
[cond-mat/0703798] Fluctuation theorems for harmonic oscillators


Experimental test of Hatano and Sasa's nonequilibrium steady-state equality
E. H. Trepagnier *, , C. Jarzynski , F. Ritort , G. E. Crooks ¶, C. J. Bustamante *, , ||, ** and J. Liphardt PNAS | October 19, 2004 | vol. 101 | no. 42 | 15038-15041
A two-state kinetic model for the unfolding of single molecules by mechanical force
F. Ritort , C. Bustamante , and I. Tinoco, Jr. PNAS | October 15, 2002 | vol. 99 | no. 21 | 13544-13548
Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
Jeff Gore *, Felix Ritort * and Carlos Bustamante PNAS | October 28, 2003 | vol. 100 | no. 22 | 12564-12569
Single molecule experiments in biophysics: exploring the thermal behavior of nonequilibrium small systems
F. Ritort cond-mat/0509606
Work and heat fluctuations in two-state systems: a trajectory thermodynamics formalism
F Ritort J. Stat. Mech. (2004) P10016 doi:10.1088/1742-5468/2004/10/P10016 URL:
Work and heat fluctuations in two-state systems: a trajectory thermodynamics formalism
F. Ritort cond-mat/0405707
Thermodynamic and kinetic aspects of RNA pulling experiments
Maria Manosas, Felix Ritort cond-mat/0405035
The Nonequilibrium Thermodynamics of Small Systems
[cond-mat/0606254] Force dependent fragility in RNA hairpins
[cond-mat/0606254] Force dependent fragility in RNA hairpins
[cond-mat/0609378] Single-molecule experiments in biological physics: methods and applications
[cond-mat/0511629] The Nonequilibrium Thermodynamics of Small Systems
[0705.0455] Nonequilibrium fluctuations in small systems: From physics to biology
[0707.0089] Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise

[0704.0761] Failure of the work-Hamiltonian connection for free energy calculations
[0704.2992] Fluctuation theorems and orbital magnetism in nonequilibrium state
[0704.3318] A fluctuation theorem for currents and non-linear response coefficients
[0704.0761] Failure of the work-Hamiltonian connection for free energy calculations
[0705.1252] The Tasaki-Crooks quantum fluctuation theorem
[0705.4248] Fluctuation theorem for black-body radiation
[0706.0559] Measuring thermodynamic length
[0706.1134] Comment on: Failure of the work-Hamiltonian connection for free energy calculations
[0707.0439] Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments
[0707.0962] Entropy fluctuation theorems in driven open systems: application to electron counting statistics


Brownian motors: noisy transport far from equilibrium
Peter Reimann (Universitaet Augsburg)
Journal-ref: Phys. Rep. 361, 57 (2002)
Molecular Chemical Engines: Pseudo-Static Processes and the Mechanism of Energy Transduction
Kazuo Sasaki
Tunable ratchet effects for vortices pinned by periodic magnetic dipole arrays
Gilson Carneiro
Detecting a true quantum pump effect
Colin Benjamin
Oscillations in molecular motor assemblies
Two-body problem in periodic potentials
M. Wouters , G. Orso
Inhomogeneous soliton ratchets under two ac forces
Luis Morales-Molina , Franz G. Mertens , Angel Sanchez
Physics of Transport and Traffic Phenomena in Biology: from molecular motors and cells to organisms
Debashish Chowdhury , Andreas Schadschneider , Katsuhiro Nishinari
Symmetry and environment effects on rectification mechanisms in quantum pumps
Liliana Arrachea
Dynamic Phase Transitions in Coupled Motor Proteins
Evgeny B. Stukalin , Anatoly B. Kolomeisky
Ratchet Effect and Nonlinear Transport for Particles on Random Substrates with Crossed ac Drives
C. Reichhardt , C.J. Olson Reichhardt
Journal-ref: Phys. Rev. E 73, 011102 (2006)
Phase transitions in systems with two species of molecular motors
Feedback control in a collective flashing ratchet
Stability and Dynamics of Crystals and Glasses of Motorized Particles
Tongye Shen , Peter G. Wolynes
Stability and Dynamics of Crystals and Glasses of Motorized Particles
Ken Sekimoto Journal of the Physical Society of Japan Vol.66 No.5, May, 1997 pp. 1234-1237 URL : DOI : 10.1143/JPSJ.66.1234
Directed transport of Brownian particles in a double symmetric potential
Laurent Sanchez-Palencia
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A spin-boson thermal rectifier
Dvira Segal , Abraham Nitzan
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Rectification of thermal fluctuations in ideal gases
P. Meurs , C. Van den Broeck , A. Garcia
Duality Relation for Quantum Ratchets
The charge shuttle as a nanomechanical ratchet
Walks of molecular motors interacting with immobilized filaments
Ratchet effect for cold atoms in an optical lattice
Emil Lundh , Mats Wallin (KTH, Sweden)
Dynamics of Molecular Motors with Finite Processivity on Heterogeneous Tracks
Yariv Kafri , David K. Lubensky , David R. Nelson
Efficiency of Brownian Motors
J.M.R. Parrondo , J.M. Blanco , F.J. Cao , R. Brito (Universidad Complutense de Madrid, Spain)
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Directed Chaotic Transport in Hamiltonian Ratchets
Coupled Brownian motors: Anomalous hysteresis and zero-bias negative conductance
Coupled Brownian Motors
Energetics of rocked inhomogeneous ratchets
Ground state, vibrational spectrum, and deterministic transport of a chain of charged particles
S. I. Denisov and E. S. Denisova Phys. Rev. B 68, 064301 (2003) URL: doi:10.1103/PhysRevB.68.064301
Efficiency of Brownian motors
J. M. R. Parrondo 1, J. M. Blanco 2, F. J. Cao 2 and R. Brito Europhys. Lett, 43 (3), pp. 248-254 (1998) DOI: 10.1209/epl/i1998-00348-5
Kinesin HomePage
Minimal Brownian Ratchet: An Exactly Solvable Model
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Phys. Rev. Lett. 80, 5251 (1998): Kamegawa et al. - Energetics of a Forced...
reu.pdf (application/pdf Object)
Paradoxical non-linear response of a Brownian particle
Ralf Eichhorn , Peter Reimann
Spontaneous Ratchet Effect in a Granular Gas
Directed Chaotic Transport in Hamiltonian Ratchets
Brownian motors: current fluctuations and rectification efficiency
Diffusion accompanying noise induced transport in frictional ratchets
Raishma Krishnan , Debasis Dan , A. M. Jayannavar
Driven quantum transport on the nanoscale
Driven quantum transport on the nanoscale
Transient behavior of particle transport in a Brownian motor
Random walks of molecular motors arising from diffusional encounters with immobilized filaments
Directed transport of Brownian particles in a double symmetric potential
Bioinspired laser-operated molecular locomotive
Paradoxical nonlinear response of a Brownian particle
Rectification in Luttinger liquids
D. E. Feldman , S. Scheidl , V. M. Vinokur
Journal-ref: Phys. Rev. Lett. 94, 186809 (2005)
Brownian motors
P. Hänggi , F. Marchesoni , F. Nori
Journal-ref: P. H\"anggi, F. Marchesoni, F. Nori, Annalen der Physik, Vol. 14 (1-3) 2005
Asymmetric pores in a silicon membrane acting as massively parallel brownian ratchets
Phys. Rev. E 61, 312 (2000): Kettner et al. - Drift ratchet
Efficiency of discrete-time ratchets
P. Amengual , R. Toral , A. Allison , D. Abbott
Fluctuation-response relation in a rocking ratchet
Flashing ratchet model with high efficiency
Diffusion and current of Brownian particles in tilted piecewise linear potentials: Amplification and coherence
Cooperative effects on the kinetics of ATP hydrolysis in collective molecular motors
Chaotic Hamiltonian ratchets for pulsed periodic double-well potentials: Classical correlations and the ratchet current
Stochastic resonance in a biological motor under complex fluctuations
Twirling DNA Rings - Swimming Nanomotors Ready for a Kickstart
Igor M. Kulic , Rochish Thaokar , Helmut Schiessel
Ratchet behavior in nonlinear Klein-Gordon systems with point-like inhomogeneities
Luis Morales-Molina , Franz G. Mertens , Angel Sanchez
Nonequilibrium stationary states with ratchet effect
Flux reversal in a two-state symmetric optical thermal ratchet
Sang-Hyuk Lee , David G. Grier
Ratchet, pawl and spring Brownian motor
A. Gomez-Marin , J.M. Sancho
Journal-ref: Physica D 216 (2006) 214-219
3-junction SQUID rocking ratchet
A. Sterck , R. Kleiner , D. Koelle
A random walker on a ratchet
Jose L. Mateos
Journal-ref: Physica A 351 (2005) 79-87
A Multiscale Approach to Brownian Motors
G.A. Pavliotis
Pattern formation of microtubules and motors: inelastic interaction of polar rods
A "Burnt Bridge'' Brownian Ratchet
Closed-loop control strategy with improved current for a flashing ratchet
L. Dinis , F. J. Cao , J. M. R. Parrondo
Vortex Motion Rectification in Josephson Junction Arrays with a Ratchet Potential
Quantum Ratchets in Dissipative Chaotic Systems
Noise-Enhanced Performance of Ratchet Cellular Automata
Optimal strategy for controlling transport in inertial Brownian motors
Two approaches toward a high-efficiency flashing ratchet
Renewal processes and fluctuation analysis of molecular motor stepping
Thermal Brownian motor
P. Meurs , C. Van den Broeck
Vectorial Loading of Processive Motor Proteins: Implementing a Landscape Picture
Young C. Kim , Michael E. Fisher
Rectification in one--dimensional electronic systems
Bernd Braunecker , D. E. Feldman , J. B. Marston
Journal-ref: Phys. Rev. B 72, 125311 (2005)
Coupling of Two Motor Proteins: a New Motor Can Move Faster
Evgeny B. Stukalin , Hubert Phillips III , Anatoly B. Kolomeisky
Movements of molecular motors: Ratchets, random walks and traffic phenomena
Dynamic Properties of Motor Proteins with Two Subunits
Anatoly B. Kolomeisky , Hubert Phillips III
Noise enhanced performance of ratchet cellular automata
Dusan Babic (1 and 2), Clemens Bechinger (1) ((1) 2. Physikalisches Institut, Universitaet Stuttgart, Stuttgart, Germany,(2) Faculty for Mathematics and Physics, University of Ljubljana, Ljubljana, Slovenia)
Energetics of a simple microscopic heat engine
Mesfin Asfaw , Mulugeta Bekele
Experimental Tunneling Ratchets -- Linke et al. 286 (5448): 2314 -- Science
Universal properties of interacting Brownian motors
Yashar Aghababaie*, Gautam I. Menon, and Michael Plischke Phys. Rev. E 59, 2578–2586 (1999) URL: DOI: 10.1103/PhysRevE.59.2578
Quantum Ratchets at High Temperatures
D. Zueco , J. L. Garcia-Palacios
Noise induced currents and reliability of transport in frictional ratchets
Raishma Krishnan , Debasis Dan , A. M. Jayannavar
Molecular Motor Constructed from a Double-Walled Carbon Nanotube Driven by Axially Varying Voltage
Optimal number of disperse states in the model of Brownian motors
Pushmepullyou: An efficient micro-swimmer
J.E. Avron , O. Kenneth , D.H. Oaknin
Journal-ref: New J. Phys. 7 234 (2005)
Observation of Flux Reversal in a Symmetric Optical Thermal Ratchet
Sang-Hyuk Lee , Kosta Ladavac , Marco Polin , David G. Grier
Symmetric Brownian motor
A. Gomez-Marin , J. M. Sancho
Journal-ref: Phys. Rev. E 71, 021101 (2005)
Enhanced thermodynamic efficiency in time asymmetric ratchets
Speeding up a single-molecule DNA motor with a simple catalyst
Yufang Wang , Y. Zhang , N. P. Ong
Journal-ref: Phys. Rev. E 72, 051918 (2005)
Force generation in small ensembles of Brownian motors
Martin Linden , Tomi Tuohimaa , Ann-Beth Jonsson , Mats Wallin
Pump process of the rotatory molecular motor and its energy efficiency
Hiroshi Miki , Masatoshi Sato , Mahito Kohmoto
Rectification efficiency of a Brownian motor
Spatiotemporal dynamics of optical molecular motors
Nanomachines: Methods to induce a directed motion at nanoscale
Towards understanding the guessing game: a dynamical systems’ perspective
Stefan Reimann Physica A: Statistical Mechanics and its Applications Volume 339, Issues 3-4 , 15 August 2004, Pages 559-573 doi:10.1016/j.physa.2004.03.012
New aspects on Current enhancement in Brownian motors driven by non Gaussian noises
S. Bouzat (CAB-Ib) H.S.Wio (IFCA)
Microscopic model of the actin-myosin interaction in muscular contractions
Motor protein with nonequilibrium potential: Its thermodynamics and efficiency
Anomalous transport in unbound and ratchet potentials
Noiseless limit of a ferrofluid ratchet
Volker Becker , Andreas Engel
Efficiency optimization in a correlation ratchet with asymmetric unbiased fluctuations
Motion of a rotatory molecular motor and the chemical reaction rate
Current reversal with type-I intermittency in deterministic inertia ratchets
Adiabatic rocking ratchets: Optimum-performance regimes
Voltage rectification in two dimensional Josephson junction arrays
Veronica I. Marconi
Evidence of ratchet effect in nanowires of a conducting polymer
A. Rahman , M. K. Sanyal , R. Gangopadhayy , A. De , I. Das
Journal-ref: Phys. Rev. B 73, 125313 (2006)
Diffusion in Flashing Periodic Potentials
Bernardo Spagnolo , Alexander Dubkov
Molecular heat pump
Dvira Segal , Abraham Nitzan
Journal-ref: Phys. Rev E 73 026109 (2006)
Soliton ratchets in homogeneous nonlinear Klein-Gordon systems
Luis Morales-Molina , Niurka R. Quintero , Franz G. Mertens , Angel Sanchez
Ratchet Effect in Magnetization Reversal of Stoner Particles
Z. Z. Sun , X. R. Wang
``Burnt-bridge'' mechanism of molecular motor motion
Transport reversal in a thermal ratchet
Physical analysis of a processive molecular motor: The conventional kinesin
Quantum Brownian motion in ratchet potentials: duality relation and its consequences
Flux reversal in a two-state symmetric optical thermal ratchet
Elastically coupled two-dimensional Brownian motors
Deterministic directed transport of inertial particles in a flashing ratchet potential
Molecular motor traffic in a half-open tube
Traffic of Molecular Motors
Stefan Klumpp , Melanie J. I. Muller , Reinhard Lipowsky
Active diffusion of motor particles
Cooperative Cargo Transport by Several Molecular Motors
Forcing inertial Brownian motors: efficiency and negative differential mobility
Marcin Kostur , Lukasz Machura , Peter Hänggi , Jurek Luczka , Peter Talkner
Demonstration of a controllable three-dimensional Brownian motor in symmetric potentials
Collective dynamics of molecular motors pulling on fluid membranes
O. Campas , Y. Kafri , K.B. Zeldovich , J. Casademunt , J.-F. Joanny
Cold atom realizations of Brownian motors
F. Renzoni
Journal-ref: Contemp. Phys. 46, 161 (2005)
Theory of self-assembly of microtubules and motors
Igor S. Aronson , Lev S. Tsimring
Coherent Spin Ratchets
Andreas Pfund , Dario Bercioux , Klaus Richter
Discrete soliton ratchets driven by biharmonic fields
Yaroslav Zolotaryuk , Mario Salerno
Vibrational ratchets
M. Borromeo , F. Marchesoni
Mechanical coupling in flashing ratchets
Erin M. Craig , Martin J. Zuckermann , Heiner Linke
Brownian refrigerator
C. Van den Broeck , R. Kawai
Optical ratchets with discrete cavity solitons
Andrey V. Gorbach , Sergey Denisov , Sergej Flach
Ratchet effect and nonlinear transport for particles on random substrates with crossed ac drives
Single-polymer Brownian motor: A simulation study
Vibrational ratchets
Rotary motor powered by stochastic uncorrelated dipoles
Analytical theory of the stochastic dynamics of the power stroke in nonprocessive motor proteins
Energetics of a simple microscopic heat engine
Two approaches toward a high-efficiency flashing ratchet
Dynamics of molecular motors with finite processivity on heterogeneous tracks
Symmetric Brownian motor
Directed chaotic transport in Hamiltonian ratchets
Overdamped Deterministic Ratchets Driven By Multifrequency Forces
David Cubero (1), Jesús Casado-Pascual (1), Azucena Alvarez (1), Manuel Morillo (1), Peter Hänggi (2) ((1) Física Teórica, Universidad de Sevilla, Spain, (2) Institut für Physik, Universität Augsburg, Germany)
Stoke's efficiency of temporally rocked ratchets
Raishma Krishnan , Jim Chacko , Mamata Sahoo , A. M. Jayannavar
Dynamic stability of spindles controlled by molecular motor kinetics
Otger Campas , Jaume Casademunt , Ignacio Pagonabarraga
Collective Effects in Models for Interacting Molecular Motors and Motor-Microtubule Mixtures
Gautam I. Menon
Brownian molecular motors driven by rotation-translation coupling
Brian Geislinger , Ryoichi Kawai
Efficiency and Fluctuation in Tight-Coupling Model of Molecular Motor
Hidetsugu Sakaguchi
Threshold feedback control for a collective flashing ratchet: threshold dependence
M. Feito , F. J. Cao
Exploring the operation of a tiny heat engine
Mesfin Asfaw , Mulugeta Bekele
Powering a burnt bridges Brownian ratchet: A model for an extracellular motor driven by proteolysis of collagen
Thermal Rectification in Billiard-like Systems
Jean-Pierre Eckmann , Carlos Mejia-Monasterio
Quantum ratchet with cold atoms in a pair of pulsed optical lattices
Gabriel G. Carlo , Giuliano Benenti , Giulio Casati , Sandro Wimberger , Oliver Morsch , Riccardo Mannella , Ennio Arimondo
Weak chaos and fractional dynamics in an optically driven colloidal ring
Yael Roichman , George Zaslavsky , David G. Grier
Overdamped thermal ratchets in one and more dimensions. Kinesin transport and protein folding
Quantum diffusion in biased washboard potentials: Strong friction limit
Dynamic transitions in coupled motor proteins
Mechanical coupling in flashing ratchets
Brownian motor with time-delayed feedback
Nonlinear dynamics and self-organization of rotary molecular motor ensembles
[cond-mat/0606305] Rectifying effect of RF current in single magnetic nanowire
[cond-mat/0606302] Nanomachines driven by thermal bath
[cond-mat/0606487] One-dimensional nonrelativistic and relativistic Brownian motions: A microscopic collision model
[quant-ph/0606124] Current behavior of a quantum Hamiltonian ratchet in resonance
[cond-mat/0607322] From aggressive driving to molecular motor traffic
[cond-mat/0607380] Zeeman ratchets for ballistic spin currents
[cond-mat/0609069] Tight coupling in thermal Brownian motors
[cond-mat/0609004] Phase synchronization in tilted deterministic ratchets
[cond-mat/0608569] The design of a thermal rectifier
The design of a thermal rectifier
[cond-mat/0610262] Quasiperiodically driven ratchets for cold atoms
[cond-mat/0609608] Two hard spheres in a spherical pore: Exact analytic results in two and three dimensions
[cond-mat/0609546] Role of interactions in ferrofluid thermal ratchets
[cond-mat/0609560] Reversible Vortex Ratchet Effects and Ordering in Superconductors with One-Dimensional Asymmetric Potential Arrays
[cond-mat/0609452] Absolute negative mobility by forcing inertial Brownian particles in periodic potential
[cond-mat/0610369] Symmetries of the ratchet current
[cond-mat/0610360] Generalized Einstein Relation for Brownian Motion in Tilted Periodic Potential
Theory of self-assembly of microtubules and motors
Hsp70 chaperones accelerate protein translocation and the unfolding of stable protein aggregates by entropic pulling -- De Los Rios et al. 103 (16): 6166 -- Proceedings of the National Academy of Sciences
[cond-mat/0610847] Spin current and rectification in one-dimensional electronic systems
[cond-mat/0610757] Fluctuations, Responses and Energetics of Molecular Motors
[q-bio/0610045] Kinesin as an electrostatic machine
[cond-mat/0610651] Exact Solutions of Burnt-Bridge Models for Molecular Motor Transport
[cond-mat/0611140] A Granular Brownian Ratchet Model
[cond-mat/0611283] Granular Brownian Motor
[cond-mat/0611277] Transport of Forced Quantum Motors in the Strong Friction Limit
[cond-mat/0611250] Magnetically Induced Thermal Rectification
[cond-mat/0611247] Transport of a heated granular gas in a washboard potential
[cond-mat/0611508] Current rectification by asymmetric molecules: An ab initio study
[cond-mat/0611436] Rectification effects in coherent transport through single molecules
[cond-mat/0611432] Dynamics of Quantum Dissipative Systems: The Example of Quantum Brownian Motors
[cond-mat/0611630] Universality in ratchets without spatial asymmetry
[cond-mat/0612059] Heat production and energy balance in nanoengines driven by time-dependent fields
[cond-mat/0611771] Two simple models of classical heat pumps
[physics/0611302] Controllable 3D atomic Brownian motor in optical lattices
[q-bio/0612026] Dwell time symmetry in random walks and molecular motors
[cond-mat/0612390] Rocking ratchets in 2D Josephson networks: collective effects and current reversal
[cond-mat/0701076] Colloids in a periodic potential: driven lattice gas in continuous space
[cond-mat/0701169] Propulsion of a molecular machine by asymmetric distribution of reaction--products
[cond-mat/0701168] Designing phoretic micro- and nano-swimmers
[cond-mat/0701445] Dipole-induced vortex ratchets in superconducting films with arrays of micromagnets
[cond-mat/0701522] Heteropolymer translocation through nanopores
[cond-mat/0701505] Analytical Solution to Transport in Brownian Ratchets via Gambler's Ruin Model
[cond-mat/0702668] Dissipationless Directed Transport in Rocked Single-Band Quantum Dynamics
[physics/0702194] Traffic phenomena in biology: from molecular motors to organisms
[quant-ph/0702066] Rectification of the lateral Casimir force in a vibrating non-contact rack and pinion
[cond-mat/0703492] Information and flux in a feedback controlled Brownian ratchet
[cond-mat/0703583] Interaction Between Motor Domains Can Explain the Complex Dynamics of Heterodimeric Kinesins
[physics/0703048] Illusion of Control in a Brownian Game
[cond-mat/0703404] Anomalous Dynamics of Unbiased Polymer Translocation through a Narrow Pore
[0704.1911] Motor driven microtubule shape fluctuations - force from within the lattice
[0704.3692] Analytically solvable model of a driven system with quenched dichotomous disorder
[0704.3794] Non-equilibrium mechanics and dynamics of motor activated gels
[0704.3802] Entropic Studies of Cytoskeletal Motors Jamming
[0704.3817] Trapping mechanism in overdamped ratchets with quenched noise
[0704.3955] Characterisation of a three-dimensional Brownian motor in optical lattices
[0705.0138] Symmetry Relations for Trajectories of a Brownian Motor
[0705.0690] Dynamic Properties of Molecular Motors in Burnt-Bridge Models
[0705.2057] The geometric theory of mesoscopic stochastic pump and reversible ratchet effects
[0705.2594] Molecular Spiders in One Dimension
[0705.2596] Molecular Spiders with Memory
[0705.2669] Motion-reversal in a simple microscopic swimmer
[0705.2905] Brownian ratchets driven by asymmetric nucleation of hydrolysis waves
[0705.3463] Transient rectification of Brownian diffusion with asymmetric initial distribution
[0705.4041] Multidimensional coupling in a controllable three-dimensional Brownian motor in optical lattices
[0706.1496] Time-Delayed Feedback control of a flashing ratchet
[0706.3276] The ratchet effect and the transporting islands in the chaotic sea
[0706.3726] Reversible stochastic pump currents in interacting nanoscale conductors
[0706.4466] Flux enhancement and multistability induced by time delays in a feedback controlled flashing ratchet
[0707.0901] Effect of time delay on feedback control of a flashing ratchet


Stationary nonequilibrium statistical mechanics


[cond-mat/0606022] Quantum-based Mechanical Force Realization in Pico-Newton Range
[physics/0612252] Towards absolute calibration of optical tweezers
[physics/0702044] Collecting single molecules with conventional optical tweezers
[physics/0702047] Nanotrapping and the thermodynamics of optical tweezers
Magnetic Tweezers
Optical Tweezers Introduction
Optical Tweezers
[physics/0607286] Modelling optical micro-machines
[cond-mat/0609276] Colloidal transport through optical tweezer arrays


[cond-mat/0611003] A simple model for protein mechanical unfolding
[cond-mat/0612433] Measuring the energy landscape roughness and the transition state location of biomolecules using single molecule mechanical unfolding experiments
[cond-mat/0703040] Isolated Non-Equilibrium Systems in Contact
[cond-mat/0703455] Organic Spintronics
[0706.2818] Protein mechanical unfolding: a model with binary variables


[0706.0393] Micro- and Macrorheological Properties of Isotropically Cross-linked Actin Networks
[0706.0388] Cross-linker unbinding and self-similarity in bundled cytoskeletal networks

Created automatically on Wednesday 14 November 2007 11:47:52