### Fluctuation theorems

### Jarzynski identity

- cond-mat/0511629

C. Bustamante , J. Liphardt , F. Ritort

Journal-ref: Physics Today, vol. 58 (2005) 43-48- Work probability distribution in single molecule experiments
- 10.1209/epl/i2004-10390-3
- Inequivalence of Statistical Ensembles in Single Molecule Measurements
- cond-mat/0412504

Supurna Sinha , Joseph Samuel - Mechanical Stretching of Proteins: Calmodulin and Titin
- q-bio/0412032

Marek Cieplak - Simultaneous current-, force- and work function measurement with atomic resolution
- 10.1063/1.1900316
- On practical applicability of the Jarzynski relation in statistical mechanics: a pedagogical example
- 10.1021/jp0455428
- An experimental test of the Jarzynski equality in a mechanical experiment
- cond-mat/0502395

F. Douarche (Phys-ENS), S. Ciliberto (Phys-ENS), A. Petrosyan (Phys-ENS), I. Rabbiosi (Phys-ENS) - Distribution of work in isothermal non-equilibrium processes
- 10.1103/PhysRevE.70.066112
- Unified Treatment of Quantum Fluctuation Theorem and Jarzynski Equality in Terms of microscopic reversibility
- cond-mat/0410623

T.Monnai - Inferring DNA sequences from mechanical unzipping: an ideal-case study
- cond-mat/0506221

V. Baldazzi , S. Cocco , E. Marinari , R. Monasson - Estimate of the free energy difference in mechanical systems from work fluctuations: experiments and models
- cond-mat/0504465

Frederic Douarche (Phys-ENS), Sergio Ciliberto (Phys-ENS), Artem Petrosyan (Phys-ENS) - Work distribution functions for hysteresis loops in a single-spin system
- 10.1103/PhysRevE.72.066112
- Nonequilibrium Potential Function of Chemically Driven Single Macromolecules via Jarzynski-Type Log-Mean-Exponential Work
- 10.1021/jp0545391
- Equilibrium free energies from fast-switching trajectories with large time steps
- cond-mat/0507375

Wolfgang Lechner , Harald Oberhofer , Christoph Dellago , Phillip L. Geissler - Work probability distribution in systems driven out of equilibrium
- 10.1103/PhysRevE.72.046114
- Jarzynski equality for the Jepsen gas
- cond-mat/0506289

I. Bena , C. Van den Broeck , R. Kawai

Journal-ref: Europhysics Letters 71, pp. 879-885 (2005). - Validity condition of the Jarzynski relation for a classical mechanical system
- cond-mat/0506214

Jaeyoung Sung - Phys. Rev. E 56, 5018 (1997): Jarzynski - Equilibrium free-energy differences from...
- Flaw of Jarzynski's equality when applied to systems with several degrees of freedom
- cond-mat/0508721

D.H.E.Gross - Reply to comments by D.H.E. Gross
- cond-mat/0509344

Christopher Jarzynski - Reply to Jarzynski's comment cond-mat/0509344
- cond-mat/0509648

D.H.E.Gross - Force Unfolding Single RNAs: from Equilibrium to Far-from Equilibrium
- cond-mat/0504236

Fei Liu , Zhong-can Ou-Yang - Entropy production along a stochastic trajectory and an integral fluctuation theorem
- cond-mat/0503686

Udo Seifert

Journal-ref: Phys Rev Lett, 95, 040602, 2005 - Work distribution and path integrals in general mean-field systems
- 10.1209/epl/i2005-10067-5
- Breakdown of the Jarzynski relation for an adiabatic stretching of an isotropic spring
- cond-mat/0510119

Jaeyoung Sung - Note on cond-mat/0510119: Jarzynski equation for adiabatically stretched rotor
- cond-mat/0510270

Markus Bier - Reversible Unfolding of Single RNA Molecules by Mechanical Force -- Liphardt et al. 292 (5517): 733 -- Science
- Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality -- Liphardt et al. 296 (5574): 1832 -- Science
- Calculating potentials of mean force and diffusion coefficients from nonequilibirum processes without Jarzynski's equality
- 10.1063/1.2166379
- Non-equilibrium work relations
- cond-mat/0511073

Jorge Kurchan - Direct evaluation of large-deviation functions
- cond-mat/0511248

Cristian Giardina' , Jorge Kurchan , Luca Peliti - Illustration of the Jarzynski nonequilibrium work relation for an ideal gas
- cond-mat/0511302

Rhonald C. Lua - Work-probability distribution in systems driven out of equilibrium
- Unified treatment of the quantum fluctuation theorem and the Jarzynski equality in terms of microscopic reversibility
- Fluctuations of work from quantum subensembles: The case against quantum work-fluctuation theorems
- Fluctuation and dissipation of work in a Joule experiment
- 10.1103/PhysRevLett.96.050601
- Work distribution functions in polymer stretching experiments
- A simple proof of the Jarzynski equality?
- cond-mat/0512181

Frédéric Douarche (Phys-ENS) - Reply to Note on cond-mat/0510270: Jarzynski equation for adiabatically stretched rotor
- cond-mat/0512250

Jaeyoung Sung - Non-equilibrium thermodynamics of small-scale systems
- cond-mat/0512268

J.M. Rubi - Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
- cond-mat/0512266

D. Collin , F. Ritort , C. Jarzynski , S. B. Smith , I. Tinoco , C. Bustamante

Journal-ref: Nature, vol. 437 (2005) 231-234 - A possible generalized form of Jarzynski equality
- cond-mat/0512443

Z. C. Tu , Zicong Zhou - A one-dimensional model for theoretical analysis of single molecule experiments
- cond-mat/0601263

Erik Van der Straeten , Jan Naudts - Fluctuation Theorems of Brownian Particles Controlled by a Maxwell's Demon
- physics/0601085

Kyung Hyuk Kim , Hong Qian - Time-symmetric fluctuations in nonequilibrium systems
- cond-mat/0601299

Christian Maes , Maarten H. van Wieren - Evaluation of free energy landscapes from manipulation experiments
- 10.1088/1742-5468/2006/03/P03005
- Heat Fluctuations in Brownian Transducers
- cond-mat/0602144

A. Gomez-Marin , J.M. Sancho

Journal-ref: Phys. Rev. E 73, 045101(R) (2006) - Fluctuation symmetries for work and heat
- cond-mat/0602311

Marco Baiesi , Tim Jacobs , Christian Maes , Nikos S. Skantzos - Inequivalence of statistical ensembles in single molecule measurements
- Three-dimensional bead position histograms reveal single-molecule nanomechanics
- Probability distributions of the work in the 2D-Ising model
- cond-mat/0602580

Christophe Chatelain (LPM), Dragi Karevski (LPM) - A proof of Jarzynski's non-equilibrium work theorem for dynamical systems that conserve the canonical distribution
- cond-mat/0603856

Elisabeth Scholl-Paschinger , Christoph Dellago - Work fluctuations for a Brownian particle between two thermostats
- cond-mat/0605069

Paolo Visco - Path-integral analysis of fluctuation theorems for general Langevin processes
- cond-mat/0605471

Vladimir Y. Chernyak (Wayne State), Michael Chertkov (LANL), Christopher Jarzynski (LANL) - Heat fluctuations in Brownian transducers
- Rare events and the convergence of exponentially averaged work values
- Fluctuation theorems for quantum master equations
- [cond-mat/0606361] Thermodynamics for single-molecule stretching experiments
- [cond-mat/0607575] Validation of the Jarzynski relation for a system with strong thermal coupling: an isothermal ideal gas model
- [cond-mat/0609085] Jarzynski Equality with Maxwell's Demon
- [cond-mat/0611078] The distribution function of entropy flow in stochastic systems
- [cond-mat/0611516] A charged particle in a magnetic field - Jarzynski Equality
- [cond-mat/0612021] Non-equilibrium work fluctuations for oscillators in non-Markovian baths
- [cond-mat/0612305] Comparison of far-from-equilibrium work relations
- [cond-mat/0612527] Failure of the Jarzynski identity for a simple quantum system
- [cond-mat/0612423] Asymmetry of the work probability distribution
- [cond-mat/0701003] Comment on "Failure of the Jarzynski identity for a simple quantum system"
- [cond-mat/0701303] Work Fluctuations and Stochastic Resonance
- [cond-mat/0702044] Temperature-extended Jarzynski relation: Application to the numerical calculation of the surface tension
- [cond-mat/0703189] Fluctuation theorems: Work is not an observable
- [0705.1945] The Jarzynski equality. Thermodynamic analysis and microscopic foundations
- [0706.1994] On the Quantum Jarzynski Identity
- [0706.3749] Quantum Operation Time Reversal

### Gallavotti-Cohen

- Breakdown of Gallavotti-Cohen symmetry for stochastic dynamics
- cond-mat/0512159

R. J. Harris , A. Rákos , G. M. Schuetz - Fluctuation theorem for currents and Schnakenberg network theory
- cond-mat/0512254

David Andrieux , Pierre Gaspard - Fluctuation theorem for constrained equilibrium systems
- cond-mat/0601435

T. Gilbert , J. R. Dorfman - Fluctuation theorem applied to the Nos\'e-Hoover thermostated Lorentz gas
- cond-mat/0602458

Thomas Gilbert - Fluctuation theorems for quantum master equations
- cond-mat/0602679

Massimiliano Esposito , Shaul Mukamel - Nonequilibrium statistical mechanics and entropy production in a classical infinite system of rotators
- [cond-mat/0606477] Entropy, Nonequilibrium, Chaos and Infinitesimals
- [cond-mat/0606690] Entropy, Thermostats and Chaotic Hypothesis
- [cond-mat/0612019] Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence
- [cond-mat/0612260] Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state
- [cond-mat/0612397] Gallavotti-Cohen theorem, Chaotic Hypothesis and the zero-noise limit
- [physics/0612167] Fluctuation theorem for entropy production during effusion of an ideal gas with momentum transfer
- [cond-mat/0701124] Quantum Nonequilibrium and Entropy creation
- [cond-mat/0702376] Fluctuation theorem for counting-statistics in electron transport through quantum junctions
- [cond-mat/0702553] Fluctuation theorems for stochastic dynamics
- [cond-mat/0703254] A novel fluctuation relation for a L\'evy particle
- [cond-mat/0703347] Quantum fluctuation theorem: Can we go from micro to meso?
- [cond-mat/0703798] Fluctuation theorems for harmonic oscillators
### Felix

- Experimental test of Hatano and Sasa's nonequilibrium steady-state equality
- E. H. Trepagnier *, , C. Jarzynski , F. Ritort , G. E. Crooks ΒΆ, C. J. Bustamante *, , ||, ** and J. Liphardt PNAS | October 19, 2004 | vol. 101 | no. 42 | 15038-15041
- A two-state kinetic model for the unfolding of single molecules by mechanical force
- F. Ritort , C. Bustamante , and I. Tinoco, Jr. PNAS | October 15, 2002 | vol. 99 | no. 21 | 13544-13548
- Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
- Jeff Gore *, Felix Ritort * and Carlos Bustamante PNAS | October 28, 2003 | vol. 100 | no. 22 | 12564-12569
- Single molecule experiments in biophysics: exploring the thermal behavior of nonequilibrium small systems
- F. Ritort cond-mat/0509606
- Work and heat fluctuations in two-state systems: a trajectory thermodynamics formalism
- F Ritort J. Stat. Mech. (2004) P10016 doi:10.1088/1742-5468/2004/10/P10016 URL: http://stacks.iop.org/1742-5468/2004/P10016
- Work and heat fluctuations in two-state systems: a trajectory thermodynamics formalism
- F. Ritort cond-mat/0405707
- Thermodynamic and kinetic aspects of RNA pulling experiments
- Maria Manosas, Felix Ritort cond-mat/0405035
- The Nonequilibrium Thermodynamics of Small Systems
- [cond-mat/0606254] Force dependent fragility in RNA hairpins
- [cond-mat/0606254] Force dependent fragility in RNA hairpins
- [cond-mat/0609378] Single-molecule experiments in biological physics: methods and applications
- [cond-mat/0511629] The Nonequilibrium Thermodynamics of Small Systems
- [0705.0455] Nonequilibrium fluctuations in small systems: From physics to biology
- [0707.0089] Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise
- [0704.0761] Failure of the work-Hamiltonian connection for free energy calculations
- [0704.2992] Fluctuation theorems and orbital magnetism in nonequilibrium state
- [0704.3318] A fluctuation theorem for currents and non-linear response coefficients
- [0704.0761] Failure of the work-Hamiltonian connection for free energy calculations
- [0705.1252] The Tasaki-Crooks quantum fluctuation theorem
- [0705.4248] Fluctuation theorem for black-body radiation
- [0706.0559] Measuring thermodynamic length
- [0706.1134] Comment on: Failure of the work-Hamiltonian connection for free energy calculations
- [0707.0439] Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments
- [0707.0962] Entropy fluctuation theorems in driven open systems: application to electron counting statistics
### Motors

- Brownian motors: noisy transport far from equilibrium
- cond-mat/0010237

Peter Reimann (Universitaet Augsburg)

Journal-ref: Phys. Rep. 361, 57 (2002) - Molecular Chemical Engines: Pseudo-Static Processes and the Mechanism of Energy Transduction
- cond-mat/0508037

Kazuo Sasaki - Tunable ratchet effects for vortices pinned by periodic magnetic dipole arrays
- cond-mat/0508318

Gilson Carneiro - Detecting a true quantum pump effect
- cond-mat/0508176

Colin Benjamin - Oscillations in molecular motor assemblies
- 10.1088/0953-8984/17/47/018
- Two-body problem in periodic potentials
- cond-mat/0509093

M. Wouters , G. Orso - Inhomogeneous soliton ratchets under two ac forces
- cond-mat/0509051

Luis Morales-Molina , Franz G. Mertens , Angel Sanchez - Physics of Transport and Traffic Phenomena in Biology: from molecular motors and cells to organisms
- physics/0509025

Debashish Chowdhury , Andreas Schadschneider , Katsuhiro Nishinari - Symmetry and environment effects on rectification mechanisms in quantum pumps
- cond-mat/0509129

Liliana Arrachea - Dynamic Phase Transitions in Coupled Motor Proteins
- cond-mat/0509457

Evgeny B. Stukalin , Anatoly B. Kolomeisky - Ratchet Effect and Nonlinear Transport for Particles on Random Substrates with Crossed ac Drives
- cond-mat/0509311

C. Reichhardt , C.J. Olson Reichhardt

Journal-ref: Phys. Rev. E 73, 011102 (2006) - Phase transitions in systems with two species of molecular motors
- 10.1209/epl/i2003-10155-6
- Feedback control in a collective flashing ratchet
- 10.1103/PhysRevLett.93.040603
- Stability and Dynamics of Crystals and Glasses of Motorized Particles
- cond-mat/0403180

Tongye Shen , Peter G. Wolynes - Stability and Dynamics of Crystals and Glasses of Motorized Particles
- Ken Sekimoto Journal of the Physical Society of Japan Vol.66 No.5, May, 1997 pp. 1234-1237 URL : http://jpsj.ipap.jp/link?JPSJ/66/1234/ DOI : 10.1143/JPSJ.66.1234
- Directed transport of Brownian particles in a double symmetric potential
- cond-mat/0404731

Laurent Sanchez-Palencia

Journal-ref: Physical Review E 70 (2004) 011102 - A spin-boson thermal rectifier
- cond-mat/0405472

Dvira Segal , Abraham Nitzan

Journal-ref: Phys. Rev. Lett. 94, 034301 (2005). - Rectification of thermal fluctuations in ideal gases
- cond-mat/0407180

P. Meurs , C. Van den Broeck , A. Garcia - Duality Relation for Quantum Ratchets
- 10.1103/PhysRevE.71.010101
- The charge shuttle as a nanomechanical ratchet
- 10.1103/PhysRevLett.94.036806
- Walks of molecular motors interacting with immobilized filaments
- 10.1016/j.physa.2004.11.023
- Ratchet effect for cold atoms in an optical lattice
- cond-mat/0409185

Emil Lundh , Mats Wallin (KTH, Sweden) - Dynamics of Molecular Motors with Finite Processivity on Heterogeneous Tracks
- cond-mat/0409198

Yariv Kafri , David K. Lubensky , David R. Nelson - Efficiency of Brownian Motors
- cond-mat/9803302

J.M.R. Parrondo , J.M. Blanco , F.J. Cao , R. Brito (Universidad Complutense de Madrid, Spain)

Journal-ref: Europhys. Lett, 43 (3), 248-254 (1998) - Directed Chaotic Transport in Hamiltonian Ratchets
- 10.1103/PhysRevE.71.026228
- Coupled Brownian motors: Anomalous hysteresis and zero-bias negative conductance
- Coupled Brownian Motors
- Energetics of rocked inhomogeneous ratchets
- Ground state, vibrational spectrum, and deterministic transport of a chain of charged particles
- S. I. Denisov and E. S. Denisova Phys. Rev. B 68, 064301 (2003) URL: http://link.aps.org/abstract/PRB/v68/e064301 doi:10.1103/PhysRevB.68.064301
- Efficiency of Brownian motors
- J. M. R. Parrondo 1, J. M. Blanco 2, F. J. Cao 2 and R. Brito Europhys. Lett, 43 (3), pp. 248-254 (1998) DOI: 10.1209/epl/i1998-00348-5 http://www.edpsciences.org/articles/epl/abs/1998/15/43303/43303.html
- http://www.eprairie.com/printer/article.asp?newsletterID=4574
- Kinesin HomePage
- Minimal Brownian Ratchet: An Exactly Solvable Model
- Youngki Lee,1,2 Andrew Allison,3 Derek Abbott,3 and H. Eugene Stanley Phys. Rev. Lett. 91, 220601 (2003) URL: http://link.aps.org/abstract/PRL/v91/e220601 doi:10.1103/PhysRevLett.91.220601
- Phys. Rev. E 57, 7297 (1998): Parrondo - Reversible ratchets as Brownian...
- Phys. Rev. E 61, 6287 (2000): Buceta et al. - Negative resistance and anomalous...
- Phys. Rev. Lett. 80, 5251 (1998): Kamegawa et al. - Energetics of a Forced...
- pubs.html
- reu.pdf (application/pdf Object)
- Paradoxical non-linear response of a Brownian particle
- cond-mat/0406155

Ralf Eichhorn , Peter Reimann - Spontaneous Ratchet Effect in a Granular Gas
- Directed Chaotic Transport in Hamiltonian Ratchets
- 10.1103/PhysRevE.71.026228
- Brownian motors: current fluctuations and rectification efficiency
- 10.1103/PhysRevE.70.061105
- Diffusion accompanying noise induced transport in frictional ratchets
- cond-mat/0409287

Raishma Krishnan , Debasis Dan , A. M. Jayannavar - Driven quantum transport on the nanoscale
- 10.1016/j.physrep.2004.11.002
- Driven quantum transport on the nanoscale
- doi:10.1103/PhysRevE.70.021102
- 10.1016/j.physrep.2004.11.002
- Transient behavior of particle transport in a Brownian motor
- Random walks of molecular motors arising from diffusional encounters with immobilized filaments
- Directed transport of Brownian particles in a double symmetric potential
- Bioinspired laser-operated molecular locomotive
- Paradoxical nonlinear response of a Brownian particle
- Rectification in Luttinger liquids
- cond-mat/0410089

D. E. Feldman , S. Scheidl , V. M. Vinokur

Journal-ref: Phys. Rev. Lett. 94, 186809 (2005) - Brownian motors
- cond-mat/0410033

P. Hänggi , F. Marchesoni , F. Nori

Journal-ref: P. H\"anggi, F. Marchesoni, F. Nori, Annalen der Physik, Vol. 14 (1-3) 2005 - Asymmetric pores in a silicon membrane acting as massively parallel brownian ratchets
- Phys. Rev. E 61, 312 (2000): Kettner et al. - Drift ratchet
- Efficiency of discrete-time ratchets
- cond-mat/0410173

P. Amengual , R. Toral , A. Allison , D. Abbott - Fluctuation-response relation in a rocking ratchet
- Flashing ratchet model with high efficiency
- Diffusion and current of Brownian particles in tilted piecewise linear potentials: Amplification and coherence
- Cooperative effects on the kinetics of ATP hydrolysis in collective molecular motors
- Chaotic Hamiltonian ratchets for pulsed periodic double-well potentials: Classical correlations and the ratchet current
- Stochastic resonance in a biological motor under complex fluctuations
- Twirling DNA Rings - Swimming Nanomotors Ready for a Kickstart
- cond-mat/0410197

Igor M. Kulic , Rochish Thaokar , Helmut Schiessel - Ratchet behavior in nonlinear Klein-Gordon systems with point-like inhomogeneities
- cond-mat/0410320

Luis Morales-Molina , Franz G. Mertens , Angel Sanchez - Nonequilibrium stationary states with ratchet effect
- 10.1103/PhysRevE.71.036111
- Flux reversal in a two-state symmetric optical thermal ratchet
- cond-mat/0506285

Sang-Hyuk Lee , David G. Grier - Ratchet, pawl and spring Brownian motor
- cond-mat/0506543

A. Gomez-Marin , J.M. Sancho

Journal-ref: Physica D 216 (2006) 214-219 - 3-junction SQUID rocking ratchet
- cond-mat/0507017

A. Sterck , R. Kleiner , D. Koelle - A random walker on a ratchet
- cond-mat/0507027

Jose L. Mateos

Journal-ref: Physica A 351 (2005) 79-87 - A Multiscale Approach to Brownian Motors
- cond-mat/0504403

G.A. Pavliotis - Pattern formation of microtubules and motors: inelastic interaction of polar rods
- 10.1103/PhysRevE.71.050901
- A "Burnt Bridge'' Brownian Ratchet
- 10.1103/PhysRevE.72.046104
- Closed-loop control strategy with improved current for a flashing ratchet
- cond-mat/0505125

L. Dinis , F. J. Cao , J. M. R. Parrondo - Vortex Motion Rectification in Josephson Junction Arrays with a Ratchet Potential
- Quantum Ratchets in Dissipative Chaotic Systems
- Noise-Enhanced Performance of Ratchet Cellular Automata
- Optimal strategy for controlling transport in inertial Brownian motors
- 10.1088/0953-8984/17/47/007
- Two approaches toward a high-efficiency flashing ratchet
- Renewal processes and fluctuation analysis of molecular motor stepping
- 10.1088/1478-3975/2/3/008
- Thermal Brownian motor
- cond-mat/0505753

P. Meurs , C. Van den Broeck - Vectorial Loading of Processive Motor Proteins: Implementing a Landscape Picture
- cond-mat/0506185

Young C. Kim , Michael E. Fisher - Rectification in one--dimensional electronic systems
- cond-mat/0506095

Bernd Braunecker , D. E. Feldman , J. B. Marston

Journal-ref: Phys. Rev. B 72, 125311 (2005) - Coupling of Two Motor Proteins: a New Motor Can Move Faster
- cond-mat/0502474

Evgeny B. Stukalin , Hubert Phillips III , Anatoly B. Kolomeisky - Movements of molecular motors: Ratchets, random walks and traffic phenomena
- 10.1016/j.physe.2005.05.037
- Dynamic Properties of Motor Proteins with Two Subunits
- cond-mat/0503169

Anatoly B. Kolomeisky , Hubert Phillips III - Noise enhanced performance of ratchet cellular automata
- cond-mat/0503279

Dusan Babic (1 and 2), Clemens Bechinger (1) ((1) 2. Physikalisches Institut, Universitaet Stuttgart, Stuttgart, Germany,(2) Faculty for Mathematics and Physics, University of Ljubljana, Ljubljana, Slovenia) - Energetics of a simple microscopic heat engine
- cond-mat/0503578

Mesfin Asfaw , Mulugeta Bekele - Experimental Tunneling Ratchets -- Linke et al. 286 (5448): 2314 -- Science
- Universal properties of interacting Brownian motors
- Yashar Aghababaie*, Gautam I. Menon, and Michael Plischke Phys. Rev. E 59, 2578β2586 (1999) URL: http://link.aps.org/abstract/PRE/v59/p2578 DOI: 10.1103/PhysRevE.59.2578
- Quantum Ratchets at High Temperatures
- cond-mat/0412566

D. Zueco , J. L. Garcia-Palacios - Noise induced currents and reliability of transport in frictional ratchets
- cond-mat/0501106

Raishma Krishnan , Debasis Dan , A. M. Jayannavar - Molecular Motor Constructed from a Double-Walled Carbon Nanotube Driven by Axially Varying Voltage
- 10.1103/PhysRevB.72.033404
- Optimal number of disperse states in the model of Brownian motors
- Pushmepullyou: An efficient micro-swimmer
- math-ph/0501049

J.E. Avron , O. Kenneth , D.H. Oaknin

Journal-ref: New J. Phys. 7 234 (2005) - Observation of Flux Reversal in a Symmetric Optical Thermal Ratchet
- cond-mat/0411731

Sang-Hyuk Lee , Kosta Ladavac , Marco Polin , David G. Grier - Symmetric Brownian motor
- cond-mat/0411604

A. Gomez-Marin , J. M. Sancho

Journal-ref: Phys. Rev. E 71, 021101 (2005) - Enhanced thermodynamic efficiency in time asymmetric ratchets
- 10.1088/1742-5468/2005/04/P04012
- Speeding up a single-molecule DNA motor with a simple catalyst
- cond-mat/0412287

Yufang Wang , Y. Zhang , N. P. Ong

Journal-ref: Phys. Rev. E 72, 051918 (2005) - Force generation in small ensembles of Brownian motors
- q-bio/0412026

Martin Linden , Tomi Tuohimaa , Ann-Beth Jonsson , Mats Wallin - Pump process of the rotatory molecular motor and its energy efficiency
- physics/0411061

Hiroshi Miki , Masatoshi Sato , Mahito Kohmoto - Rectification efficiency of a Brownian motor
- Spatiotemporal dynamics of optical molecular motors
- Nanomachines: Methods to induce a directed motion at nanoscale
- Towards understanding the guessing game: a dynamical systemsβ perspective
- Stefan Reimann Physica A: Statistical Mechanics and its Applications Volume 339, Issues 3-4 , 15 August 2004, Pages 559-573 doi:10.1016/j.physa.2004.03.012
- New aspects on Current enhancement in Brownian motors driven by non Gaussian noises
- cond-mat/0410576

S. Bouzat (CAB-Ib) H.S.Wio (IFCA) - Microscopic model of the actin-myosin interaction in muscular contractions
- Motor protein with nonequilibrium potential: Its thermodynamics and efficiency
- Anomalous transport in unbound and ratchet potentials
- Noiseless limit of a ferrofluid ratchet
- cond-mat/0411060

Volker Becker , Andreas Engel - Efficiency optimization in a correlation ratchet with asymmetric unbiased fluctuations
- Motion of a rotatory molecular motor and the chemical reaction rate
- Current reversal with type-I intermittency in deterministic inertia ratchets
- Adiabatic rocking ratchets: Optimum-performance regimes
- Voltage rectification in two dimensional Josephson junction arrays
- cond-mat/0510039

Veronica I. Marconi - Evidence of ratchet effect in nanowires of a conducting polymer
- cond-mat/0510188

A. Rahman , M. K. Sanyal , R. Gangopadhayy , A. De , I. Das

Journal-ref: Phys. Rev. B 73, 125313 (2006) - Diffusion in Flashing Periodic Potentials
- cond-mat/0510170

Bernardo Spagnolo , Alexander Dubkov - Molecular heat pump
- cond-mat/0510262

Dvira Segal , Abraham Nitzan

Journal-ref: Phys. Rev E 73 026109 (2006) - Soliton ratchets in homogeneous nonlinear Klein-Gordon systems
- cond-mat/0510704

Luis Morales-Molina , Niurka R. Quintero , Franz G. Mertens , Angel Sanchez - Ratchet Effect in Magnetization Reversal of Stoner Particles
- cond-mat/0511135

Z. Z. Sun , X. R. Wang - ``Burnt-bridge'' mechanism of molecular motor motion
- Transport reversal in a thermal ratchet
- Physical analysis of a processive molecular motor: The conventional kinesin
- Quantum Brownian motion in ratchet potentials: duality relation and its consequences
- 10.1016/j.chemphys.2005.07.004
- Flux reversal in a two-state symmetric optical thermal ratchet
- Elastically coupled two-dimensional Brownian motors
- Deterministic directed transport of inertial particles in a flashing ratchet potential
- Molecular motor traffic in a half-open tube
- 10.1088/0953-8984/17/47/014
- Traffic of Molecular Motors
- cond-mat/0512119

Stefan Klumpp , Melanie J. I. Muller , Reinhard Lipowsky - Active diffusion of motor particles
- 10.1103/PhysRevLett.95.268102
- Cooperative Cargo Transport by Several Molecular Motors
- 10.1073/pnas.0507363102
- Forcing inertial Brownian motors: efficiency and negative differential mobility
- cond-mat/0512152

Marcin Kostur , Lukasz Machura , Peter Hänggi , Jurek Luczka , Peter Talkner - Demonstration of a controllable three-dimensional Brownian motor in symmetric potentials
- 10.1103/PhysRevLett.96.190602
- Collective dynamics of molecular motors pulling on fluid membranes
- q-bio/0512018

O. Campas , Y. Kafri , K.B. Zeldovich , J. Casademunt , J.-F. Joanny - Cold atom realizations of Brownian motors
- cond-mat/0512550

F. Renzoni

Journal-ref: Contemp. Phys. 46, 161 (2005) - Theory of self-assembly of microtubules and motors
- cond-mat/0512659

Igor S. Aronson , Lev S. Tsimring - Coherent Spin Ratchets
- cond-mat/0601118

Andreas Pfund , Dario Bercioux , Klaus Richter - Discrete soliton ratchets driven by biharmonic fields
- nlin/0601044

Yaroslav Zolotaryuk , Mario Salerno - Vibrational ratchets
- cond-mat/0601609

M. Borromeo , F. Marchesoni - Mechanical coupling in flashing ratchets
- cond-mat/0602097

Erin M. Craig , Martin J. Zuckermann , Heiner Linke - Brownian refrigerator
- cond-mat/0602153

C. Van den Broeck , R. Kawai - Optical ratchets with discrete cavity solitons
- nlin/0602004

Andrey V. Gorbach , Sergey Denisov , Sergej Flach - Ratchet effect and nonlinear transport for particles on random substrates with crossed ac drives
- Single-polymer Brownian motor: A simulation study
- Vibrational ratchets
- Rotary motor powered by stochastic uncorrelated dipoles
- Analytical theory of the stochastic dynamics of the power stroke in nonprocessive motor proteins
- Energetics of a simple microscopic heat engine
- Two approaches toward a high-efficiency flashing ratchet
- Dynamics of molecular motors with finite processivity on heterogeneous tracks
- Symmetric Brownian motor
- Directed chaotic transport in Hamiltonian ratchets
- Overdamped Deterministic Ratchets Driven By Multifrequency Forces
- cond-mat/0603128

David Cubero (1), Jesús Casado-Pascual (1), Azucena Alvarez (1), Manuel Morillo (1), Peter Hänggi (2) ((1) Física Teórica, Universidad de Sevilla, Spain, (2) Institut für Physik, Universität Augsburg, Germany) - Stoke's efficiency of temporally rocked ratchets
- cond-mat/0603778

Raishma Krishnan , Jim Chacko , Mamata Sahoo , A. M. Jayannavar - Dynamic stability of spindles controlled by molecular motor kinetics
- q-bio/0603036

Otger Campas , Jaume Casademunt , Ignacio Pagonabarraga - Collective Effects in Models for Interacting Molecular Motors and Motor-Microtubule Mixtures
- cond-mat/0604163

Gautam I. Menon - Brownian molecular motors driven by rotation-translation coupling
- cond-mat/0604087

Brian Geislinger , Ryoichi Kawai - Efficiency and Fluctuation in Tight-Coupling Model of Molecular Motor
- cond-mat/0605185

Hidetsugu Sakaguchi - Threshold feedback control for a collective flashing ratchet: threshold dependence
- cond-mat/0605275

M. Feito , F. J. Cao - Exploring the operation of a tiny heat engine
- cond-mat/0605233

Mesfin Asfaw , Mulugeta Bekele - Powering a burnt bridges Brownian ratchet: A model for an extracellular motor driven by proteolysis of collagen
- Thermal Rectification in Billiard-like Systems
- cond-mat/0605710

Jean-Pierre Eckmann , Carlos Mejia-Monasterio - Quantum ratchet with cold atoms in a pair of pulsed optical lattices
- cond-mat/0605695

Gabriel G. Carlo , Giuliano Benenti , Giulio Casati , Sandro Wimberger , Oliver Morsch , Riccardo Mannella , Ennio Arimondo - Weak chaos and fractional dynamics in an optically driven colloidal ring
- cond-mat/0605686

Yael Roichman , George Zaslavsky , David G. Grier - Overdamped thermal ratchets in one and more dimensions. Kinesin transport and protein folding
- Quantum diffusion in biased washboard potentials: Strong friction limit
- Dynamic transitions in coupled motor proteins
- Mechanical coupling in flashing ratchets
- Brownian motor with time-delayed feedback
- Nonlinear dynamics and self-organization of rotary molecular motor ensembles
- [cond-mat/0606305] Rectifying effect of RF current in single magnetic nanowire
- [cond-mat/0606302] Nanomachines driven by thermal bath
- [cond-mat/0606487] One-dimensional nonrelativistic and relativistic Brownian motions: A microscopic collision model
- [quant-ph/0606124] Current behavior of a quantum Hamiltonian ratchet in resonance
- [cond-mat/0607322] From aggressive driving to molecular motor traffic
- [cond-mat/0607380] Zeeman ratchets for ballistic spin currents
- [cond-mat/0609069] Tight coupling in thermal Brownian motors
- [cond-mat/0609004] Phase synchronization in tilted deterministic ratchets
- [cond-mat/0608569] The design of a thermal rectifier
- The design of a thermal rectifier
- [cond-mat/0610262] Quasiperiodically driven ratchets for cold atoms
- [cond-mat/0609608] Two hard spheres in a spherical pore: Exact analytic results in two and three dimensions
- [cond-mat/0609546] Role of interactions in ferrofluid thermal ratchets
- [cond-mat/0609560] Reversible Vortex Ratchet Effects and Ordering in Superconductors with One-Dimensional Asymmetric Potential Arrays
- [cond-mat/0609452] Absolute negative mobility by forcing inertial Brownian particles in periodic potential
- [cond-mat/0610369] Symmetries of the ratchet current
- [cond-mat/0610360] Generalized Einstein Relation for Brownian Motion in Tilted Periodic Potential
- Theory of self-assembly of microtubules and motors
- Hsp70 chaperones accelerate protein translocation and the unfolding of stable protein aggregates by entropic pulling -- De Los Rios et al. 103 (16): 6166 -- Proceedings of the National Academy of Sciences
- [cond-mat/0610847] Spin current and rectification in one-dimensional electronic systems
- [cond-mat/0610757] Fluctuations, Responses and Energetics of Molecular Motors
- [q-bio/0610045] Kinesin as an electrostatic machine
- [cond-mat/0610651] Exact Solutions of Burnt-Bridge Models for Molecular Motor Transport
- [cond-mat/0611140] A Granular Brownian Ratchet Model
- [cond-mat/0611283] Granular Brownian Motor
- [cond-mat/0611277] Transport of Forced Quantum Motors in the Strong Friction Limit
- [cond-mat/0611250] Magnetically Induced Thermal Rectification
- [cond-mat/0611247] Transport of a heated granular gas in a washboard potential
- [cond-mat/0611508] Current rectification by asymmetric molecules: An ab initio study
- [cond-mat/0611436] Rectification effects in coherent transport through single molecules
- [cond-mat/0611432] Dynamics of Quantum Dissipative Systems: The Example of Quantum Brownian Motors
- [cond-mat/0611630] Universality in ratchets without spatial asymmetry
- [cond-mat/0612059] Heat production and energy balance in nanoengines driven by time-dependent fields
- [cond-mat/0611771] Two simple models of classical heat pumps
- [physics/0611302] Controllable 3D atomic Brownian motor in optical lattices
- [q-bio/0612026] Dwell time symmetry in random walks and molecular motors
- [cond-mat/0612390] Rocking ratchets in 2D Josephson networks: collective effects and current reversal
- [cond-mat/0701076] Colloids in a periodic potential: driven lattice gas in continuous space
- [cond-mat/0701169] Propulsion of a molecular machine by asymmetric distribution of reaction--products
- [cond-mat/0701168] Designing phoretic micro- and nano-swimmers
- [cond-mat/0701445] Dipole-induced vortex ratchets in superconducting films with arrays of micromagnets
- [cond-mat/0701522] Heteropolymer translocation through nanopores
- [cond-mat/0701505] Analytical Solution to Transport in Brownian Ratchets via Gambler's Ruin Model
- [cond-mat/0702668] Dissipationless Directed Transport in Rocked Single-Band Quantum Dynamics
- [physics/0702194] Traffic phenomena in biology: from molecular motors to organisms
- [quant-ph/0702066] Rectification of the lateral Casimir force in a vibrating non-contact rack and pinion
- [cond-mat/0703492] Information and flux in a feedback controlled Brownian ratchet
- [cond-mat/0703583] Interaction Between Motor Domains Can Explain the Complex Dynamics of Heterodimeric Kinesins
- [physics/0703048] Illusion of Control in a Brownian Game
- [cond-mat/0703404] Anomalous Dynamics of Unbiased Polymer Translocation through a Narrow Pore
- [0704.1911] Motor driven microtubule shape fluctuations - force from within the lattice
- [0704.3692] Analytically solvable model of a driven system with quenched dichotomous disorder
- [0704.3794] Non-equilibrium mechanics and dynamics of motor activated gels
- [0704.3802] Entropic Studies of Cytoskeletal Motors Jamming
- [0704.3817] Trapping mechanism in overdamped ratchets with quenched noise
- [0704.3955] Characterisation of a three-dimensional Brownian motor in optical lattices
- [0705.0138] Symmetry Relations for Trajectories of a Brownian Motor
- [0705.0690] Dynamic Properties of Molecular Motors in Burnt-Bridge Models
- [0705.2057] The geometric theory of mesoscopic stochastic pump and reversible ratchet effects
- [0705.2594] Molecular Spiders in One Dimension
- [0705.2596] Molecular Spiders with Memory
- [0705.2669] Motion-reversal in a simple microscopic swimmer
- [0705.2905] Brownian ratchets driven by asymmetric nucleation of hydrolysis waves
- [0705.3463] Transient rectification of Brownian diffusion with asymmetric initial distribution
- [0705.4041] Multidimensional coupling in a controllable three-dimensional Brownian motor in optical lattices
- [0706.1496] Time-Delayed Feedback control of a flashing ratchet
- [0706.3276] The ratchet effect and the transporting islands in the chaotic sea
- [0706.3726] Reversible stochastic pump currents in interacting nanoscale conductors
- [0706.4466] Flux enhancement and multistability induced by time delays in a feedback controlled flashing ratchet
- [0707.0901] Effect of time delay on feedback control of a flashing ratchet
### generalities

- Stationary nonequilibrium statistical mechanics
### tweezers

- [cond-mat/0606022] Quantum-based Mechanical Force Realization in Pico-Newton Range
- [physics/0612252] Towards absolute calibration of optical tweezers
- [physics/0702044] Collecting single molecules with conventional optical tweezers
- [physics/0702047] Nanotrapping and the thermodynamics of optical tweezers
- Magnetic Tweezers
- Optical Tweezers Introduction
- Optical Tweezers
- [physics/0607286] Modelling optical micro-machines
- [cond-mat/0609276] Colloidal transport through optical tweezer arrays
### various

- [cond-mat/0611003] A simple model for protein mechanical unfolding
- [cond-mat/0612433] Measuring the energy landscape roughness and the transition state location of biomolecules using single molecule mechanical unfolding experiments
- [cond-mat/0703040] Isolated Non-Equilibrium Systems in Contact
- [cond-mat/0703455] Organic Spintronics
- [0706.2818] Protein mechanical unfolding: a model with binary variables
### cytoskeleton

- [0706.0393] Micro- and Macrorheological Properties of Isotropically Cross-linked Actin Networks
- [0706.0388] Cross-linker unbinding and self-similarity in bundled cytoskeletal networks