1. A. Hospodková, F. Hájek, T. Hubáček, Z. Gedeonová, P. Hubík, J. J. Mareš, J. Pangrác, F. Dominec, K. Kuldová, E. Hulicius
    Electron mobility in GaN layers and HEMT structure optimized by MOVPE technological parameters
    Journal of Crystal Growth 605 (2023) 127061-1-127061-7.
  2. J. J. Mareš, V. Špička, P. Hubík
    Possible role of extracellular tissue in biological neural networks
    European Physical Journal-Special Topics 230 (2021) 1089-1098.
  3. J. J. Mareš, P. Hubík, V. Špička
    Diffusive propagation of nervous signals and their quantum control
    European Physical Journal-Special Topics 227 (2019) 2329-2347.
  4. J. Fiala, J. J. Mareš, J. Šesták
    Reflections on how to evaluate the professional value of scientific papers and their corresponding citations
    Scientometrics 112 (2017) 697-709.
  5. J. J. Mareš, P. Hubík, V. Špička
    On relativistic transformation of temperature
    Fortschritte der Physik-Progress of Physics 65 (2017) 1-13.
  6. J. Šesták, P. Hubík, J. J. Mareš, J. Stávek
    Self-organized Periodic Processes: From Macro-layers to Micro-world of Diffusion and Down to the Quantum Aspects of Light
    Chapter 6, pp. 131-158 in: Thermal Physics and Thermal Analysis. Eds: J. Šesták, P. Hubík, J. J. Mareš, Springer International Publishing Switzerland, Cham, 2017.
  7. M. Holeček, J. J. Mareš, J. Šesták, P. Hubík
    What Is the Physical and Operational Meaning of Temperature and Its Self-Measurability During Unsteady Thermal Processes Within Thermodynamic Concepts?
    Chapter 3, pp. 45-78 in: Thermal Physics and Thermal Analysis. Eds: J. Šesták, P. Hubík, J. J. Mareš, Springer International Publishing Switzerland, Cham, 2017.
  8. J. Šesták, P. Hubík, J. J. Mareš
    Thermal Analysis Scheme Anticipated for Better Understanding of the Earth Climate Changes: Impact of Irradiation, Absorbability, Atmosphere, and Nanoparticles
    Chapter 22, 471-494 in: Thermal Physics and Thermal Analysis. Eds: J. Šesták, P. Hubík, J. J. Mareš, Springer International Publishing Switzerland, Cham, 2017.
  9. J. J. Mareš, P. Hubík, V. Špička
    On the Mathematical Structure of Physical Quantities
    Chapter 24, pp. 521-540 in: Thermal Physics and Thermal Analysis. Eds: J. Šesták, P. Hubík, J. J. Mareš, Springer International Publishing Switzerland, Cham, 2017.
  10. J. J. Mareš
    Do we know what the temperature is?
    Journal of Thermal Analysis and Calorimetry 120 (2015) 223-230.
  11. J. J. Mareš, P. Hubík, J. Šesták
    Linear Transport Constitutive Relations
    Selected properties of functional materials. Eds.: D. Křemenáková, R. Mishra, J. Militký, J. J. Mareš, J. Šesták. Technical University - Liberec, Institute of Physics AS CR v.v.i.- Prague, University of West Bohemia - Pilsen,(Liberec) 2013, pp. 309-318, ISBN: 978-4-1-45-573058-2.
  12. J. J. Mareš, P. Hubík, J. Šesták
    Quantum Diffusion and Periodic Reactions
    Selected properties of functional materials. Eds.: D. Křemenáková, R. Mishra, J. Militký, J. J. Mareš, J. Šesták. Technical University - Liberec, Institute of Physics AS CR v.v.i.- Prague, University of West Bohemia - Pilsen,(Liberec) 2013, pp. 319-329, ISBN: 978-80-87269-28-2.
  13. P. Hubík, J. J. Mareš
    Electron Transport Studies of Disorder and Dimensionality in Nano-Crystalline Diamond
    Thermal analysis of Micro, Nano and Non-Crystalline Materials. Editors J. Šesták, P. Šimon. Springer (Dordrecht) 2013, pp. 371-397, ISBN: 978-90-481-3149-5.
  14. J. J. Mareš, P. Hubík, Š. Uxa, J. Krištofik, H. Kozak
    Point contact to single-crystalline diamond
    Semiconductor Science and Technology 27 (2012) 065013(1)-065013(4).
  15. P. Hubík, J. J. Mareš, H. Kozak, A. Kromka, B. Rezek, J. Krištofik, D. Kindl
    Transport properties of hydrogen-terminated nanocrystalline diamond films
    Diamond and Related Materials 24 (2012) 63-68.
  16. J. J. Mareš, P. Hubík, J. Krištofik
    Application of the electrostatic Thompson–Lampard theorem to resistivity measurements
    Measurement Science and Technology 23 (2012) 045004(1)-045004(5).
  17. J. J. Mareš, P. Hubík, V. Špička, J. Stávek, J. Šesták, J. Krištofik
    Shadows over the speed of light
    Physica Scripta T151 (2012) 014080(1)-014080(7).
  18. B. Rezek, J. Čermák, A. Kromka, M. Ledinský, P. Hubík, J. J. Mareš, A. Purkrt, V. Cimrová, A. Fejfar, J. Kočka
    Synthesis, structure, and opto-electronic properties of organic-based nanoscale heterojunctions
    Nanoscale Research Letters 6 (2011) 238(1)-238(12).
  19. J. Šesták, J. J. Mareš, P. Hubík
    Thermodynamic, Structural and Behavioral Aspects of Materials Accentuating Non-crystalline States 2.vyd.
    Published by O.P.S. (2011) ISBN: 978-80-87269-20-6, pp. 1-607. 2. vyd. Editors: J. Šesták, M. Holeček, J. Málek, D. Křemenáková
  20. J. J. Mareš, P. Hubík, J. Krištofik, L. Prušáková, Š. Uxa, T. Paskova, K. Evans
    Radial space-charge-limited electron flow in semi-insulating GaN:Fe
    Journal of Applied Physics 110 (2011) 013723(1)-013723(6).
  21. J. Šesták, B. Hlaváček, P. Hubík, J. J. Mareš
    Vibration Forms in the Vicinity of Glass Transition, Structural Changes and the Creation of Voids When Assuming the Role of Polarizability
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2 Springer (Dordrecht London Heidelberg New York) 2011 Rok vydání: 2010 , Chapter 3, pp. 41 - 58
  22. J. Šesták, C. A. Queiroz, J. J. Mareš, M. Holeček
    Some Aspects of Vitrification, Amorphisation and Disordering and the Generated Extent of Nano-Crystallinity
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2, Springer (Dordrecht London Heidelberg New York) 2011, Rok vydání: 2010, Chapter 4, pp. 59 - 75
  23. J. J. Mareš, J. Šesták, P. Hubík
    Transport Constitutive Relations, Quantum Diffusion and Periodic Reactions
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2, Springer (Dordrecht London Heidelberg New York) 2011, Rok vydání: 2010, Chapter 14, pp. 227 - 244
  24. J. Šesták, P. Hubík, J. J. Mareš
    Historical Roots and Development of Thermal Analysis and Calorimetry
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2, Springer (Dordrecht London Heidelberg New York) 2011, Rok vydání: 2010, Chapter 21, pp. 347 - 370
  25. J. Čermák, B. Rezek, P. Hubík, J. J. Mareš, A. Kromka, A. Fejfar
    Photo-conductivity and Hall mobility of holes at polypyrrole-diamond interface
    Diamond and Related Materials 19 (2010) 174-177.
  26. J. Šesták, P. Hubík, J. J. Mareš
    Thermal analysis scheme aimed at better understanding of the Earth's climate changes due to the alternating irradiation
    Journal of Thermal Analysis and Calorimetry 101 (2010) 567-575.
  27. J. J. Mareš, P. Hubík, J. Šesták, V. Špička, J. Krištofik, J. Stávek
    Relativistic transformation of temperature and Mosengeil–Ott’s antinomy
    Physica E: Low-dimensional Systems and Nanostructures 42 (2010) 484-487.
  28. J. J. Mareš, J. Tauc
    Early Research into Amorphous Semiconductors
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2, Springer (Dordrecht London Heidelberg New York) 2011, Rok vydání: 2010, Preface, pp. v - ix
  29. J. J. Mareš
    Hotness Manifold, Phenomenological Temperature and Other Related Concepts of Thermal Physics
    Glassy, Amorphous and Nano-Crystalline Materials: Thermal Physics, Analysis, Structure and Properties, Editors: J. Šesták, J. J. Mareš, P. Hubík ISBN 978-90-481-2881-5, e-ISBN 978-90-481-2882-2, Springer (Dordrecht London Heidelberg New York) 2011, Rok vydání: 2010, Chapter 20, pp. 327 - 346
  30. Z. Klava, J. Šesták, J. J. Mareš, J. Stávek
    Transdisciplinarity of diffusion including aspects of quasiparticles, quantum diffusion and self-organized reaction periodicity
    Some Thermodynamic, Structural and Behavioral Aspects of Materials Accentuating Non-crystalline States, Published by O.P.S. (2009) ISBN: 978-80-87269-06-0, pp. 428-454.
  31. P. Hubík, J. J. Mareš
    Low-temperature measurements of disorder-induced effects in low-dimensional systems
    Some Thermodynamic, Structural and Behavioral Aspects of Materials Accentuating Non-crystalline States, Published by O.P.S. (2009) ISBN: 978-80-87269-06-0, pp. 456-484.
  32. J. Šesták, J. J. Mareš, P. Hubík, I. Proks
    Contribution by Lazare and Sadi Carnot to the caloric theory of heat and its inspirative role in thermodynamics
    Journal of Thermal Analysis and Calorimetry 97 (2009) 679-683.
  33. D. Kindl, P. Hubík, J. Krištofik, J. J. Mareš, Z. Výborný, M. R. Leys, S. Boeykens
    Deep defects in GaN/AlGaN/SiC hererostructures
    Journal of Applied Physics 105 (2009) 093706-1-093706-8.
  34. J. J. Mareš, P. Hubík, J. Krištofik, M. Nesládek
    Low-Temperature Phenomena in Highly Doped Grained Diamond
    Journal of Nanoscience and Nanotechnology 9 (2009) 3689-3694.
  35. J. J. Mareš, P. Hubík, J. Krištofik, M. Nesládek
    Selected topics related to the transport and superconductivity in boron-doped diamond.
    Science and Technology of Advanced Materials 9 (2009) 044101(1)-044101(6).
  36. J. J. Mareš, A. Siddiki, D. Kindl, P. Hubík, J. Krištofik
    Electrostatic screening and experimental evidence of a topological phase transition in a bulk quantum Hall liquid
    New Journal of Physics 11 (2009) 083028-1-083028-17.
  37. K.Morawetz, P.Lipavský, J. J. Mareš
    Discontinuity of capacitance at the onset of surface superconductivity
    New Journal of Physics 11 (2009) 023032(1)-023032(8).
  38. J. J. Mareš
    Phenomenological meaning of temperature
    Some Thermodynamic, Structural and Behavioral Aspects of Materials Accentuating Non-crystalline States, Published by O.P.S. (2009) ISBN: 978-80-87269-06-0, pp. 60-78.
  39. O. A. Williams, M. Nesládek, J. J. Mareš, P. Hubík
    Growth and Properties of Nanocrystalline Diamond Films
    Chapter 2 in Physics and Applications of CVD Diamond, eds. S. Koizumi, Ch. Nebel and M. Nesládek, Wiley-VCH Verlag, 2008, pp. 13-27.
  40. J. J. Mareš, P. Hubík, J. Šesták, V. Špička, J. Krištofik, J. Stávek
    Phenomenological approach to the caloric theory of heat
    Thermochimica Acta 474 (2008) 16-24.
  41. J. J. Mareš, P. Hubík, J. Krištofik, J. Ristein, P. Strobel, L. Ley
    Influence of ambient humidity on the surface conductivity of hydrogenated diamond
    Diamond and Related Materials 17 (2008) 1356-1361.
  42. J. J. Mareš, P. Hubík, J. Krištofik, M. Nesládek
    Grain boundary effects in nanocrystalline diamond
    physica status solidi (a) 205 (2008) 2163-2168.
  43. J. J. Mareš, P. Hubík, J. Krištofik, D. Kindl, M. Nesládek
    Quantum Transport in Boron-Doped Nanocrystalline Diamond
    Chemical Vapor Deposition 14 (2008) 161-172.
  44. B. Hlaváček, J. J. Mareš
    Physics of amorphous and crystalline materials
    Univerzita Pardubice, Grantová agentura AVČR, Pardubice 2008,ISBN 978-80-7395-023-1, pp. 1-347
  45. J. J. Mareš, M. Nesládek, P. Hubík, D. Kindl, J. Krištofik
    On unconventional superconductivity in boron-doped diamond
    Diamond and Related Materials 16 (2007) 1-5.
  46. J. J. Mareš, P. Hubík, M. Nesládek, J. Krištofik
    Boron-doped diamond — Grained Mott's metal revealing superconductivity
    Diamond and Related Materials 16 (2007) 921-925.
  47. V. Špička, J. J. Mareš, P. Hubík, J. Krištofik
    Some quantum experiments from the point of view of stochastic electrodynamics
    in Beyond the Quantum, eds. T. M. Nieuwenhuizen et al., World Scientific Publishers, New Jersey, USA, 2007, pp. 247-270
  48. J. Šesták, J. J. Mareš
    From caloric to stathmograph and polarography
    Journal of Thermal Analysis and Calorimetry 88 (2007) 763-768.
  49. M. Nesládek, J. J. Mareš, P. Hubík
    Superconductivity and Low-Dimensional Electrical Transport in Nanocrystalline Diamond.
    New Diamond and Frontier Carbon Technology 16 (2007) 323-336.
  50. V. Linhart, P. Bém, M. Götz, M. Honusek, J. J. Mareš, T. Slavíček, B. Sopko, E. Šimečková
    Radiation damage study of GaAs detectors irradiated by fast neutrons
    Nuclear Instruments and Methods in Physics Research A 563 (2006) 66-69.