1. K. Biswas, J.I. Urgel, A. Sánchez-Grande, S. Edalatmanesh, J. Santos, B. Cirera, P. Mutombo, K. Lauwaet, R. Miranda, P. Jelínek, N. Martín, D. Écija
    On-surface synthesis of doubly-linked one-dimensional pentacene ladder polymers
    Chemical Communications 56 (2020) 15309-15312.
  2. T. Michnowicz, B. Borca, R. Pétuya, V. Schendel, M. Pristl, I. Pentegov, U. Kraft, H. Klauk, P. Wahl, P. Mutombo, P. Jelínek, A. Arnau, U. Schlickum, K. Kern
    Controlling Single Molecule Conductance by a Locally Induced Chemical Reaction on Individual Thiophene Units
    Angewandte Chemie International Edition 59 (2020) 6207 -6212.
  3. J. Berger, M. Ondráček, O. Stetsovych, P. Malý, P. Holý, J. Rybáček, M. Švec, I.G. Stará, T. Mančal, I. Starý, P. Jelínek
    Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
    Nature Communications 11 (2020) 1337-1-1337-10.
  4. B. J. Mallada Faes, S. Edalatmanesh, P. Lazar, J. R. López Roso Redondo, A. J. Gallardo Caparrós, R. Zbořil, P. Jelínek, M. Švec, B. De La Torre Cerdeño
    Atomic-Scale Charge Distribution Mapping of Single Substitutional p- and n-Type Dopants in Graphene
    ACS Sustainable Chemistry & Engineering 8 (2020) 3437-3444.
  5. B. Cirera, A. Sánchez-Grande, B. De La Torre Cerdeño, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, B. J. Mallada Faes, R. Zbořil, R. Miranda, O. Gröning, P. Jelínek, N. Martín, D. Ecija
    Tailoring topological order and π-conjugation to engineer quasi-metallic polymers
    Nature Nanotechnology 15 (2020) 437-443.
  6. P. Procházka, M. A. Gosalvez, L. Kormoš, B. De La Torre Cerdeño, A. J. Gallardo Caparrós, J. Alberdi-Rodriguez, T. Chutora, A. O. Makoveev, A. Shahsavar, A. Arnau, P. Jelínek, J. Čechal
    Multiscale Analysis of Phase Transformations in Self-Assembled Layers of 4,4′-Biphenyl Dicarboxylic Acid on the Ag(001) Surface
    ACS Nano 14 (2020) 7269-7279.
  7. D. Sen, P. Blonski, B. De La Torre Cerdeño, P. Jelínek, M. Otyepka
    Thermally induced intra-molecular transformation and metalation of free-base porphyrin on Au(111) surface steered by surface confinement and ad-atoms
    Nanoscale Advances 2 (2020) 2986-2991.
  8. J. Doležal, P. Mutombo, D. Nachtigallova, P. Jelínek, P. Merino, M. Švec
    Mechano-Optical Switching of a Single Molecule with Doublet Emission
    ACS Nano 14 (2020) 8931-8938.
  9. Ch. Wäckerlin, A. J. Gallardo Caparrós, A. Mairena, M. Baljozovic, A. Cahlík, A. Antalík, J. Brabec, L. Veis, D. Nachtigallova, P. Jelínek, K.-H. Ernst
    On-Surface Hydrogenation of Buckybowls: From Curved Aromatic Molecules to Planar Non-Kekulé Aromatic Hydrocarbons
    ACS Nano 14 (2020) 16735-16742.
  10. A. Sánchez-Grande, J.I. Urgel, A. Cahlík, J. Santos, S. Edalatmanesh, E. Rodríguez-Sánchez, K. Lauwaet, P. Mutombo, D. Nachtigallová, R. Nieman, H. Lischka, B. De La Torre Cerdeño, R. Miranda, O. Gröning, N. Martín, P. Jelínek, D. Écija
    Diradical organic one‐dimensional polymers synthesized on a metallic surface
    Angewandte Chemie International Edition 59 (2020) 17594-17599 .
  11. M.S.G. Mohammed, L. Colazzo, A. J. Gallardo Caparrós, J.A. Pomposo, P. Jelínek, D.G. de Oteyza
    Steering alkyne homocoupling with on-surface synthesized metal–organic complexes
    Chemical Communications 56 (2020) 8659-8662.
  12. B. De La Torre Cerdeño, A. Matěj, A. Sánchez-Grande, B. Cirera, B. J. Mallada Faes, E. Rodríguez-Sánchez, J. Santos, J.I. Mendieta-Moreno, S. Edalatmanesh, K. Lauwaet, M. Otyepka, M. Medveď, Á. Buendía, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Tailoring π-conjugation and vibrational modes to steer on-surface synthesis of pentalene-bridged ladder polymers
    Nature Communications 11 (2020) 4567(1)-4567(8).
  13. Pablo Merino, M. Švec, Jose Ignacio Martinez, P. Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, P. Jelínek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233-239.
  14. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    Journal of Physics: Condensed Matter 27 (2015) 175002(1)-175002(11).
  15. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelínek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    Journal of Physics: Condensed Matter 27 (2015) 134208(1)-134208(11).
  16. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Letters 15 (2015) 4356-4363.
  17. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nature Communications 6 (2015) 7766(1)-7766(6).
  18. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Physical Review Letters 115 (2015) 076101-1-076101-5.
  19. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686-3693.
  20. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Physical Review Letters 115 (2015) 136101(1)-136101(5).
  21. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180-9187.
  22. P. Hapala, M. Ondráček, O. Stetsovych, M. Švec, P. Jelínek
    Simultaneous nc-AFM/STM Measurements with Atomic Resolution
    Noncontact Atomic Force Microscopy vol. 3
  23. Mykola Telychko, J. Berger, Zsolt Majzik, P. Jelínek, M. Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein Journal of Nanotechnology 6 (2015) 901-906.
  24. P. Jelínek
    Theoretical challenges of simultaneous nc-AFM/STM experiments
    Imaging and Manipulation of Adsorbates Using Dynamic Force Microscopy page 81-92 year 2015 ISBN 978-3-319-17400-6 Part of the series Advances in Atom and Single Molecule Machines
  25. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  26. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403