1. A. Cahlík, J. Hellerstedt, Jesús I. Mendieta-Moreno, M. Švec, V. M. Santhini, S. Pascal, Diego Soler-Polo, S. I. Erlingsson, K. Výborný, P. Mutombo, O. Marsalek, O. Siri, P. Jelínek
    Significance Of Nuclear Quantum Effects In Hydrogen Bonded Molecular Chains
    ACS Nano 15 (2021) 10357-10365.
  2. B. J. Mallada Faes, B. De La Torre Cerdeño, J. I. Mendieta-Moreno, D. Nachtigallová, A. Matěj, M. Matoušek, P. Mutombo, J. Brabec, L. Veis, T. Cadart, M. Kotora, P. Jelínek
    On-Surface Strain-Driven Synthesis of Nonalternant Non-Benzenoid Aromatic Compounds Containing Four- to Eight-Membered Rings
    Journal of the American Chemical Society 143 (2021) 14694-14702.
  3. M. Žonda, O. Stetsovych, R. Korytár, M. Ternes, R. Temirov, A. Raccanelli, F.S.Tautz, P. Jelínek, T. Novotný, M. Švec
    Resolving Ambiguity of the Kondo Temperature Determination in Mechanically Tunable Single-Molecule Kondo Systems
    Journal of Physical Chemistry Letters 12 (2021) 6320-6325.
  4. B. J. Mallada Faes, P. Błoński, R. Langer, P. Jelínek, M. Otyepka, B. De La Torre Cerdeño
    On-Surface Synthesis of One-Dimensional Coordination Polymers with Tailored Magnetic Anisotropy
    ACS Applied Materials and Interfaces 13 (2021) 32393-32401.
  5. H. González-Herrero, J. I. Mendieta-Moreno, S. Edalatmanesh, J. Santos, N. Martín, D. Écija, B. De La Torre Cerdeño, P. Jelínek
    Atomic Scale Control and Visualization of Topological Quantum Phase Transition in π-Conjugated Polymers Driven by Their Length
    Advanced Materials 33 (2021) 2104495(1)-2104495(9).
  6. X. Peng, H. Mahalingam, Sh. Dong, P. Mutombo, J. Su, M. Telychko, Sh. Song, P. Lyu, P.W. Ng, J. Wu, P. Jelínek, Ch. Chi, A. Rodin, J. Lu
    Visualizing designer quantum states in stable macrocycle quantum corrals
    Nature Communications 12 (2021) 5895-1-5895-9.
  7. B. J. Mallada Faes, A. J. Gallardo Caparrós, M. Lamanec, B. De La Torre Cerdeño, V. Špirko, P. Hobza, P. Jelínek
    Real-space imaging of anisotropic charge of σ-hole by means of Kelvin probe force microscopy
    Science 374 (2021) 863-867.
  8. Borja Cirera, Alexander Riss, P. Mutombo, José I. Urgel, José Santos, Marco di Giovannantonio, Roland Widmer, Samuel Stolz, Qiang Sun, Max Bommert, Roman Fasel, P. Jelínek, Willi Auwaerter, Nazarjo Martín, David Écija
    On-Surface Synthesis of Organocopper Metallacycles through Activation of Inner Diacetylene Moieties
    Chemical Science 12 (2021) 12806-12811.
  9. Cristina Martín-Fuentes, José I. Urgel, S. Edalatmanesh, Eider Rodríguez-Sánchez, José Santos, P. Mutombo, Kalyan Biswas, Koen Lauwaet, José M. Gallego, Rodolfo Miranda, P. Jelínek, Nazario Martín, David Écija
    Cumulene-like Bridged Indeno[1,2-b]Fluorene p-Conjugated Polymers Synthesized on Metal Surfaces
    Chemical Communications 57 (2021) 7545-7548.
  10. K. Biswas, J.I. Urgel, K. Xu, J. Ma, A. Sánchez‐Grande, P. Mutombo, A. J. Gallardo Caparrós, K. Lauwaet, B. J. Mallada Faes, B. De La Torre Cerdeño, A. Matěj, J. M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    On‐Surface Synthesis of a Dicationic Diazahexabenzocoronene Derivative on the Au (111) Surface
    Angewandte Chemie International Edition 60 (2021) 25551-25556.
  11. J. Su, W. Fan, P. Mutombo, X. Peng, Sh. Song, M. Ondráček, P. Golub, J. Brabec, L. Veis, M. Telychko, P. Jelínek, J. Wu, J. Lu
    On-Surface Synthesis and Characterization of [7]Triangulene Quantum Ring
    Nano Letters 21 (2021) 861-867.
  12. A. Sánchez-Grande, J.I. Urgel, L. Veis, S. Edalatmanesh, J. Santos, K. Lauwaet, P. Mutombo, J.M. Gallego, J. Brabec, P. Beran, D. Nachtigallová, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Unravelling the Open-Shell Character of Peripentacene on Au(111)
    Journal of Physical Chemistry Letters 12 (2021) 330-336.
  13. M. Telychko, G. Li, P. Mutombo, D. Soler-Polo, X. Peng, J. Su, Sh. Song, M. Joo Koh, M. Edmonds, P. Jelínek, J. Wu, J. Lu
    Ultrahigh-yield on-surface synthesis and assembly of circumcoronene into a chiral electronic Kagome-honeycomb lattice
    Science Advances 7 (2021) eabf0269-1-eabf0269-7.
  14. A. Berdonces-Layunta, J. Lawrence, S. Edalatmanesh, J. Castro-Esteban, T. Wang, M.S.G. Mohammed, L. Colazzo, D. Peña, P. Jelínek, D. G. de Oteyza
    Chemical Stability of (3,1)-Chiral Graphene Nanoribbons
    ACS Nano 15 (2021) 5610-5617.
  15. V. M. Santhini, Ch. Wäckerlin, A. Cahlík, M. Ondráček, S. Pascal, A. Matěj, O. Stetsovych, P. Mutombo, P. Lazar, O. Siri, P. Jelínek
    1D Coordination π–d Conjugated Polymers with Distinct Structures Defined by the Choice of the Transition Metal: Towards a New Class of Antiaromatic Macrocycles
    Angewandte Chemie International Edition 60 (2021) 439-445.
  16. V. M. Santhini, O. Stetsovych, M. Ondráček, J. I. Mendieta Moreno, P. Mutombo, B. De La Torre Cerdeño, M. Švec, J. Klívar, I. G. Stará, H. Vázquez, I. Starý, P. Jelínek
    On-Surface Synthesis of Polyferrocenylene and its Single-Chain Conformational and Electrical Transport Properties
    Advanced Functional Materials 31 (2021) 2006391(1)-2006391(11).
  17. Pablo Merino, M. Švec, Jose Ignacio Martinez, P. Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, P. Jelínek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233-239.
  18. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    Journal of Physics: Condensed Matter 27 (2015) 175002(1)-175002(11).
  19. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelínek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    Journal of Physics: Condensed Matter 27 (2015) 134208(1)-134208(11).
  20. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Letters 15 (2015) 4356-4363.
  21. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nature Communications 6 (2015) 7766(1)-7766(6).
  22. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Physical Review Letters 115 (2015) 076101-1-076101-5.
  23. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686-3693.
  24. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Physical Review Letters 115 (2015) 136101(1)-136101(5).
  25. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180-9187.
  26. P. Hapala, M. Ondráček, O. Stetsovych, M. Švec, P. Jelínek
    Simultaneous nc-AFM/STM Measurements with Atomic Resolution
    Noncontact Atomic Force Microscopy vol. 3
  27. Mykola Telychko, J. Berger, Zsolt Majzik, P. Jelínek, M. Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein Journal of Nanotechnology 6 (2015) 901-906.
  28. P. Jelínek
    Theoretical challenges of simultaneous nc-AFM/STM experiments
    Imaging and Manipulation of Adsorbates Using Dynamic Force Microscopy page 81-92 year 2015 ISBN 978-3-319-17400-6 Part of the series Advances in Atom and Single Molecule Machines
  29. Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
    Room Temperature Discrimination of Adsorbed Molecules and Attachment Sites on the Si(111)–7 × 7 Surface Using a qPlus Sensor
    ACS Nano 7 (2013) 2686-2692.
  30. J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
    Characterization of the mechanical properties of qPlus sensors
    Beilstein Journal of Nanotechnology 4 (2013) 1-9.
  31. A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Force mapping on a partially H-covered Si(111)-(7x7) surface: Influence of tip and surface reactivity
    Physical Review B 87 (2013) 155403(1)-155403(10).
  32. E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
    Calculation of non-adiabatic coupling vectors in a local-orbital basis set
    Journal of Chemical Physics 138 (2013) 154106(1)-154106(8).
  33. P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
    Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
    Physical Review B 87 (2013) 195420(1)-195420(13).
  34. A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
    Atomic Structure Affects the Directional Dependence of Friction
    Physical Review Letters 111 (2013) 126103(1)-126103(4).
  35. Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
    Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
    Physical Review Letters 111 (2013) 106803(1)-106803(5).
  36. Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
    Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
    ACS Nano 7 (2013) 7370-7376.
  37. P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
    Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
    Physical Review B 88 (2013) 205406(1)-205406(7).
  38. Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
    Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
    Journal of Physics: Condensed Matter 25 (2013) 225301(1)- 225301(6).
  39. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  40. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  41. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  42. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  43. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403