1. A. Cahlík, J. Hellerstedt, Jesús I. Mendieta-Moreno, M. Švec, V. M. Santhini, S. Pascal, Diego Soler-Polo, S. I. Erlingsson, K. Výborný, P. Mutombo, O. Marsalek, O. Siri, P. Jelínek
    Significance Of Nuclear Quantum Effects In Hydrogen Bonded Molecular Chains
    ACS Nano 15 (2021) 10357-10365.
  2. B. J. Mallada Faes, B. De La Torre Cerdeño, J. I. Mendieta-Moreno, D. Nachtigallová, A. Matěj, M. Matoušek, P. Mutombo, J. Brabec, L. Veis, T. Cadart, M. Kotora, P. Jelínek
    On-Surface Strain-Driven Synthesis of Nonalternant Non-Benzenoid Aromatic Compounds Containing Four- to Eight-Membered Rings
    Journal of the American Chemical Society 143 (2021) 14694-14702.
  3. M. Žonda, O. Stetsovych, R. Korytár, M. Ternes, R. Temirov, A. Raccanelli, F.S.Tautz, P. Jelínek, T. Novotný, M. Švec
    Resolving Ambiguity of the Kondo Temperature Determination in Mechanically Tunable Single-Molecule Kondo Systems
    Journal of Physical Chemistry Letters 12 (2021) 6320-6325.
  4. B. J. Mallada Faes, P. Błoński, R. Langer, P. Jelínek, M. Otyepka, B. De La Torre Cerdeño
    On-Surface Synthesis of One-Dimensional Coordination Polymers with Tailored Magnetic Anisotropy
    ACS Applied Materials and Interfaces 13 (2021) 32393-32401.
  5. H. González-Herrero, J. I. Mendieta-Moreno, S. Edalatmanesh, J. Santos, N. Martín, D. Écija, B. De La Torre Cerdeño, P. Jelínek
    Atomic Scale Control and Visualization of Topological Quantum Phase Transition in π-Conjugated Polymers Driven by Their Length
    Advanced Materials 33 (2021) 2104495(1)-2104495(9).
  6. X. Peng, H. Mahalingam, Sh. Dong, P. Mutombo, J. Su, M. Telychko, Sh. Song, P. Lyu, P.W. Ng, J. Wu, P. Jelínek, Ch. Chi, A. Rodin, J. Lu
    Visualizing designer quantum states in stable macrocycle quantum corrals
    Nature Communications 12 (2021) 5895-1-5895-9.
  7. B. J. Mallada Faes, A. J. Gallardo Caparrós, M. Lamanec, B. De La Torre Cerdeño, V. Špirko, P. Hobza, P. Jelínek
    Real-space imaging of anisotropic charge of σ-hole by means of Kelvin probe force microscopy
    Science 374 (2021) 863-867.
  8. Borja Cirera, Alexander Riss, P. Mutombo, José I. Urgel, José Santos, Marco di Giovannantonio, Roland Widmer, Samuel Stolz, Qiang Sun, Max Bommert, Roman Fasel, P. Jelínek, Willi Auwaerter, Nazarjo Martín, David Écija
    On-Surface Synthesis of Organocopper Metallacycles through Activation of Inner Diacetylene Moieties
    Chemical Science 12 (2021) 12806-12811.
  9. Cristina Martín-Fuentes, José I. Urgel, S. Edalatmanesh, Eider Rodríguez-Sánchez, José Santos, P. Mutombo, Kalyan Biswas, Koen Lauwaet, José M. Gallego, Rodolfo Miranda, P. Jelínek, Nazario Martín, David Écija
    Cumulene-like Bridged Indeno[1,2-b]Fluorene p-Conjugated Polymers Synthesized on Metal Surfaces
    Chemical Communications 57 (2021) 7545-7548.
  10. K. Biswas, J.I. Urgel, K. Xu, J. Ma, A. Sánchez‐Grande, P. Mutombo, A. J. Gallardo Caparrós, K. Lauwaet, B. J. Mallada Faes, B. De La Torre Cerdeño, A. Matěj, J. M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    On‐Surface Synthesis of a Dicationic Diazahexabenzocoronene Derivative on the Au (111) Surface
    Angewandte Chemie International Edition 60 (2021) 25551-25556.
  11. J. Su, W. Fan, P. Mutombo, X. Peng, Sh. Song, M. Ondráček, P. Golub, J. Brabec, L. Veis, M. Telychko, P. Jelínek, J. Wu, J. Lu
    On-Surface Synthesis and Characterization of [7]Triangulene Quantum Ring
    Nano Letters 21 (2021) 861-867.
  12. A. Sánchez-Grande, J.I. Urgel, L. Veis, S. Edalatmanesh, J. Santos, K. Lauwaet, P. Mutombo, J.M. Gallego, J. Brabec, P. Beran, D. Nachtigallová, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Unravelling the Open-Shell Character of Peripentacene on Au(111)
    Journal of Physical Chemistry Letters 12 (2021) 330-336.
  13. M. Telychko, G. Li, P. Mutombo, D. Soler-Polo, X. Peng, J. Su, Sh. Song, M. Joo Koh, M. Edmonds, P. Jelínek, J. Wu, J. Lu
    Ultrahigh-yield on-surface synthesis and assembly of circumcoronene into a chiral electronic Kagome-honeycomb lattice
    Science Advances 7 (2021) eabf0269-1-eabf0269-7.
  14. A. Berdonces-Layunta, J. Lawrence, S. Edalatmanesh, J. Castro-Esteban, T. Wang, M.S.G. Mohammed, L. Colazzo, D. Peña, P. Jelínek, D. G. de Oteyza
    Chemical Stability of (3,1)-Chiral Graphene Nanoribbons
    ACS Nano 15 (2021) 5610-5617.
  15. V. M. Santhini, Ch. Wäckerlin, A. Cahlík, M. Ondráček, S. Pascal, A. Matěj, O. Stetsovych, P. Mutombo, P. Lazar, O. Siri, P. Jelínek
    1D Coordination π–d Conjugated Polymers with Distinct Structures Defined by the Choice of the Transition Metal: Towards a New Class of Antiaromatic Macrocycles
    Angewandte Chemie International Edition 60 (2021) 439-445.
  16. V. M. Santhini, O. Stetsovych, M. Ondráček, J. I. Mendieta Moreno, P. Mutombo, B. De La Torre Cerdeño, M. Švec, J. Klívar, I. G. Stará, H. Vázquez, I. Starý, P. Jelínek
    On-Surface Synthesis of Polyferrocenylene and its Single-Chain Conformational and Electrical Transport Properties
    Advanced Functional Materials 31 (2021) 2006391(1)-2006391(11).
  17. O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
    Principles and simulations of high-resolution STM imaging with a flexible tip apex
    Physical Review B 95 (2017) 045407(1)-045407(9).
  18. J. Onoda, M. Ondráček, P. Jelínek, Y. Sugimoto
    Electronegativity determination of individual surface atoms by atomic force microscopy
    Nature Communications 8 (2017) 15155(1)-15155(6).
  19. T. Chutora, J. R. López Roso Redondo, B. De La Torre Cerdeño, M. Švec, P. Jelínek, H. Vázquez
    Stable Au–C bonds to the substrate for fullerene-based nanostructures
    Beilstein Journal of Nanotechnology 8 (2017) 1073-1079.
  20. T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
    Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
    ACS Nano 11 (2017) 8413-8420.
  21. B. De La Torre Cerdeño, M. Švec, G. Foti, O. Krejčí, P. Hapala, A. Garcia-Lekue, T. Frederiksen, R. Zbořil, A. Arnau, H. Vázquez, P. Jelínek
    Submolecular Resolution by Variation of the Inelastic Electron Tunneling Spectroscopy Amplitude and its Relation to the AFM/STM Signal
    Physical Review Letters 119 (2017) 166001(1)-166001(6).
  22. O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
    From helical to planar chirality by on-surface chemistry
    Nature Chemistry 9 (2017) 213-218.
  23. A. Charvátová Campbell, P. Jelínek, P. Klapetek
    Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
    Measurement Science and Technology 28 (2017) 034005(1)- 034005(6).
  24. P. Jelínek
    High resolution SPM imaging of organic molecules with functionalized tips
    Journal of Physics: Condensed Matter 29 (2017) 343002(1)- 343002(18).
  25. O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
    Slow Relaxation of Surface Plasmon Excitations in Au55: The Key to Efficient Plasmonic Heating in Au/TiO2
    Journal of Physical Chemistry Letters 7 (2016) 1563-1569.
  26. P. Hapala, M. Švec, O. Stetsovych, N. J. van der Heijden, M. Ondráček, J. van der Lit, P. Mutombo, I. Swart, P. Jelínek
    Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
    Nature Communications 7 (2016) 11560(1)-11560(8).
  27. M. Ondráček, P. Hapala, P. Jelínek
    Charge-state dynamics in electrostatic force spectroscopy
    Nanotechnology 27 (2016) 274005(1)-274005(13).
  28. V. Zobač, J.P. Lewis, P. Jelínek
    Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
    Nanotechnology 27 (2016) 285202(1)-285202(8).
  29. N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelínek, I. Swart
    Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
    ACS Nano 10 (2016) 8517-8525.
  30. J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
    Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
    Journal of Physical Chemistry C 120 (2016) 21955-21961.
  31. J. van der Lit, F. Di Cicco, P. Hapala, P. Jelínek, I. Swart
    Submolecular Resolution Imaging of Molecules by Atomic Force Microscopy: The Influence of the Electrostatic Force
    Physical Review Letters 116 (2016) 096102-1-096102-5.
  32. J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
    Structural and Electronic Properties of Nitrogen-Doped Graphene
    Physical Review Letters 116 (2016) 126805(1)-126805(6).
  33. N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
    Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
    Journal of the American Chemical Society 138 (2016) 5585-5593.
  34. W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
    Tuning the conductance of benzene-based single-molecule junctions
    Organic Electronics 34 (2016) 254-261.
  35. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  36. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  37. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  38. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  39. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403