1. P. Nicolini, C. Ma, J. G. Vilhena, E. Gnecco
    Anisotropy in atomic-scale sliding friction
    Advances in Physics: X 11 (2026) 2642924(1)-2642924(19).
  2. D. Kývala, J. Kolorenč
    Inelastic electron tunneling through adatoms and molecular nanomagnets
    Physical Review B 113 (2026) 035427(1)-035427(10).
  3. O. Heczko, F. Máca, V. Drchal, L. Fekete, L. Straka, J. Zemen
    Antiphase boundaries in Ni-Mn-Ga single crystal—experiment and model
    Applied Physics Letters 128 (2026) 011901(1)-011901(6).
  4. P. Zalom, D. Rolih, R.Žitko
    Andreev bound state spectroscopy of a quantum-dot-based Aharonov-Bohm interferometer with superconducting terminals
    Physical Review B 113 (2026) 075130(1)-075130(16).
  5. O. Babčenko, M. Sojková, M. Hulman, J. Čermák, A. Kromka, V.E.P. Claerbout, P. Nicolini, D. López-Carballeira, J. Kuliček, B. Rezek
    Self-Oriented MoS2 Nanosheets on Microcrystalline Diamond Layers: Controlled Synthesis and Optoelectronic Effects
    ACS Applied electronic Materials 7 (2025) 1004-1018.
  6. M. Kuniej, K. Roszak
    Estimation of nuclear polarization via discrete measurement of nitrogen-vacancy-center spin evolution
    Physical Review A 111 (2025) 032620(1)-032620(8).
  7. J. Adriazola, K. Roszak
    Nonconvex optimization strategy for computing convex-roof entanglement
    Physical Review A 111 (2025) 032435(1)-032435(10).
  8. G.K. Nayak, P. Srinivasan, J. Todt, R. Daniel, P. Nicolini, D. Holec
    Accurate prediction of structural and mechanical properties on amorphous materials enabled through machine-learning potentials: A case study of silicon nitride
    Computational Materials Science 249 (2025) 113629(1)-113629(11).
  9. P. Galář, J. Kopenec, R. Král, F. Matějka, P. Zemenová, M. Dopita, P. Hapala, D. König, P. Vrbka, K. Kůsová
    Engineering the Thermal and Energy-Storage Properties in Quantum Dots Using Dominant Faceting: The Case Study of Silicon
    ACS Nano 19 (2025) 2196-2122.
  10. M. Hubert, T. Maleček, K. H. Ahn, M. Míšek, J. Železný, F. Máca, G. Springholz, M. Veis, K. Výborný
    Anomalous Spectroscopical Effects in an Antiferromagnetic Semiconductor: The Case of Magneto-Optical Kerr Effect
    physica status solidi (b) 2025 (2025) 1-5.
  11. F. Slanina, M. Kotrla
    Ratchet effect and jamming in dense mixtures of active and passive colloids in narrow pores
    Physical Review E 111 (2025) 015408(1)- 015408(12).
  12. L. Amidani, J. J. Joos, P. Glatzel, J. Kolorenč
    Magnetic exciton of EuS revealed by resonant inelastic x-ray scattering
    Physical Review Letters 134 (2025) 046401(1)-046401(7).
  13. C. Li, V. Pokorný, M. Žonda, J.-C. Liu, P. Zhou, O. Chahib, T. Glatzel, R. Häner, S. Decurtins, S.-X. Liu, R. Pawlak, E. Meyer
    Individual Assembly of Radical Molecules on Superconductors: Demonstrating Quantum Spin Behavior and Bistable Charge Rearrangement
    ACS Nano 19 (2025) 3403-3413.
  14. I. Mal, M. Kočí, P. Nicolini, P. Hapala
    GridFF: Efficient Simulation of Organic Molecules on Rigid Substrates
    Journal of Chemical Theory and Computation 21 (2025) 12214-12226.
  15. P. Koczanowski, P. Nicolini, H. Khaksar, E. Gnecco
    Avalanche Dynamics in Stick-Slip Cutting of Molybdenum Disulfide
    Small 21 (2025) e10186(1)-e10186(8).
  16. D. Bobok, L. Frk, V. Pokorný, M. Žonda
    Scalable effective models for superconducting nanostructures: Applications to double, triple, and quadruple quantum dots
    Physical Review B 112 (2025) 205418(1)-205418(27).
  17. A. Šik, F. Máca, I. Halevy, D. Legut
    Perpendicular magnetic anisotropy in a single Dy adatom ferrimagnet
    Scientific Reports 15 (2025) 36387 (1)-36387 (8).
  18. F. Khodabandehlou, C. Maes, K. Netočný
    Affine relationships between steady currents
    Journal of Physics A: Mathematical and Theoretical 58 (2025) 155002(1)-155002(11).
  19. A. Kalvová, P. Lipavský
    Short-time character of corrections to the generalized Kadanoff–Baym Ansatz
    European Physical Journal B - Condensed Matter and Complex Systems 98 (2025) 86(1)-86(14).
  20. M. Płodzień, S. Das, M. Lewenstein, C. Psaroudaki, K. Roszak
    Harnessing spin-qubit decoherence to probe strongly interacting quantum systems
    Physical Review B 111 (2025) L161115(1)-L161115(8).
  21. G. Bizzarri, L. Sansoni, E. Stefanutti, I. Gianani, M. Barbieri, K. Roszak, A. Chiuri
    Experimental protocol for qubit-environment entanglement detection
    AVS Quantum Science 7 (2025) 031401(1)-031401(9).
  22. F. Slanina
    Random cubic graph embedded in a hypercube: Entanglement spectrum and many-body localization
    Physical Review B 112, 02420 (2025) 024205(1)-024205(19).
  23. Š. Pajger, F. Slanina
    Jamming of active particles in narrow pores: implications for ratchet effect and diffusion coefficient
    Journal of Statistical Mechanics: Theory and Experiment 2025 (2025) 083201(1)-083201(29).
  24. P. Baláž, M. Krawczyk, J. Pawłowski, K. Roszak
    Learning entanglement from tomography data: Contradictory measurement importance for neural networks and random forests
    Physical Review A 112 (2025) 022431(1)-022431(13).
  25. M. Manikandan, P. Nicolini, P. Hapala
    Computational design of photosensitive polymer templates to drive molecular nanofabrication
    ACS Nano 18 (2024) 9969-9979.
  26. M. Krawczyk, J. Pawłowski, M. M. Maśka, K. Roszak
    Data-driven criteria for quantum correlations
    Physical Review A 109 (2024) 022405(1)-022405(12).
  27. S. Das, D. Dey, R. Raghunathan, Z. G. Soos, M. Kumar, S. Ramasesha
    Quantum phase transitions in skewed ladder systems
    Physical Chemistry Chemical Physics 26 (2024) 36-46.
  28. A. Šik, U. Wdowik, I. Halevy, D. Legut
    Spin and orbital magnetic moments of UTe2 induced by the external magnetic field
    Scientific Reports 14 (2024) 25337(1)-25337(9).
  29. F. Khodabandehlou, C. Maes, I. Maes, K. Netočný
    The vanishing of excess heat for nonequilibrium processes reaching zero ambient temperature
    Annales Henri Poincaré 25 (2024) 3371-3403.
  30. F. Khodabandehlou, C. Maes, K. Netočný
    On the Poisson equation for nonreversible Markov jump processes
    Journal of Mathematical Physics 65 (2024) 043301(1)-043301(14).
  31. P. Zalom, K. Wrześniewski, T. Novotný, I. Weymann
    Double quantum dot Andreev molecules: Phase diagrams and critical evaluation of effective models
    Physical Review B 110 (2024) 134506(1)-134506(19).
  32. J. Carracedo-Cosme, P. Hapala, P. Rubén
    Atomic force microscopy simulations for CO-functionalized tips with deep learning
    Machine Learning - Science and Technology 5 (2024) 025025(1)-025025(11).
  33. A. Cammarata, M. Dašić, P. Nicolini
    Integrating Newton’s Equations of Motion in the Reciprocal Space
    Journal of Chemical Physics 161 (2024) 084111(1)-084111(14).
  34. O. Čertík, J.E. Pask, I. Fernando, R. Goswami, N. Sukumar, L.A. Collins, G. Manzini, J. Vackář
    High-order finite element method for atomic structure calculations
    Computer Physics Communications 297 (2024) 109051(1)-109051(17).
  35. O. Koloskova, B. Chatterjee, L. Havela, T. Gouder, J. Kolorenč
    5f-electron localization in uranium binary hydrides: Photoelectron spectroscopy
    Physical Review B 109 (2024) 075165(1)-075165(9).
  36. M. M. Strzałka, R. Filip, K. Roszak
    Qubit-environment entanglement in time-dependent pure dephasing
    Physical Review A 109 (2024) 032412(1)-032412(8).
  37. V. Janiš, V. Pokorný, Š. Kos
    Failure of the Baym-Kadanoff construction to match consistently quantum dynamics with thermodynamic critical behavior
    Physical Review B 109 (2024) 075171(1)-075171(12).
  38. A. Kalvová, V. Špička, B. Velický, P. Lipavský
    Fast corrections to the generalized Kadanoff-Baym ansatz
    Physical Review B 109 (2024) 134306(1)-134306(16).
  39. E. Gnecco, P. Nicolini
    Atomic-scale stick-slip through a point defect
    Physical Review B 109 (2024) 134103(1)-134103(6).
  40. A. Apostolakis, G. Aoust, G. Maisons, L. Laurent, M. F. Pereira
    Photoacoustic spectroscopy using a quantum cascade laser for analysis of ammonia in water solutions
    ACS Omega 9 (2024) 19127-19135.
  41. N. Oinonen, A. V. Yakutovich, A. J. Gallardo Caparrós, M. Ondráček, P. Hapala, O. Krejčí
    Advancing scanning probe microscopy simulations: A decade of development in probe-particle models
    Computer Physics Communications 305 (2024) 109341(1)-109341(12).
  42. P. Zalom, M. Žonda, T. Novotný
    Hidden symmetry in interacting-quantum-dot-based multiterminal Josephson junctions
    Physical Review Letters 132 (2024) 126505(1)-126505(6).
  43. S. Cichoň, F. Máca, V. Drchal, K. Horáková, I. Kratochvílová, J. Lančok, V. Cháb, P. Čermák, Č. Drašar, J. Navrátil
    Doping of the n-type Bi2Se3 single crystal with Fe, Ru, Os and Mo
    Journal of Physics and Chemistry of Solids 185 (2024) 111794(1)-111794(10).
  44. A. Šik, E. Belsch, A. I. Lichtenstein
    Magnetism and electronic structure of a Dy adatom on a MgO(001) substrate.
    Physical Review B 108 (2023) L180408(1)-L180408(6).
  45. O. Stejskal, M. Veis, J. Hamrle
    Theoretical studies of enhanced anomalous Nernst effect in Fe3Ga
    Physical Review Materials 7 (2023) 084403(1)-084403(6).
  46. A. Kalvová, V. Špička, B. Velický, P. Lipavský
    Dynamical vertex correction to the generalized Kadanoff-Baym Ansatz
    EPL: Europhysics Letters 141 (2023) 16002(1)-16002(6).
  47. K. Roszak, J. Korbicz
    Purifying teleportation
    Quantum 7 (2023) 923(1)-923(16).
  48. T. Salamon, M. Płodzień, M. Lewenstein, K. Roszak
    Qubit-environment entanglement outside of pure decoherence: Hyperfine interaction
    Physical Review B 107 (2023) 085428(1)-085428(8).
  49. L. Havela, D. Legut, J. Kolorenč
    Hydrogen in actinides: electronic and lattice properties
    Reports on Progress in Physics 86 (2023) 056501(1)-056501(25).
  50. M. Liao, A. Silva, L. Du, P. Nicolini, V.E.P. Claerbout, D. Kramer, R. Yang, D. Shi, T. Polcar, G. Zhang
    Twisting Dynamics of Large Lattice-Mismatch van der Waals Heterostructures
    ACS Applied Materials and Interfaces 15 (2023) 19616-19623.