1. J. Hellerstedt, A. Cahlík, O. Stetsovych, M. Švec, T. K. Shimizu, P. Mutombo, J. Klívar, I.G. Stará, P. Jelínek, I. Starý
    Aromatic Azide Transformation on the Ag(111) Surface Studied by Scanning Probe Microscopy
    Angewandte Chemie International Edition 58 (2019) 2266-2271.
  2. A. Sánchez-Grande, B. De La Torre Cerdeño, J. Santos, B. Cirera, K. Lauwaet, T. Chutora, S. Edalatmanesh, P. Mutombo, J. Rosen, R. Zbořil, R. Miranda, J. Bjork, P. Jelínek, N. Martín, D. Ecija
    On‐surface synthesis of ethynylene bridged anthracene polymers
    Angewandte Chemie International Edition 58 (2019) 6559- 6563.
  3. T. Chutora, B. De La Torre Cerdeño, P. Mutombo, J. Hellerstedt, J. Kopeček, P. Jelínek, M. Švec
    Nitrous oxide as an effective AFM tip functionalization: a comparative study
    Beilstein Journal of Nanotechnology 10 (2019) 315-321.
  4. B. Cirera, B. De La Torre Cerdeño, D. Moreno, M. Ondráček, R. Zbořil, R. Miranda, P. Jelínek, D. Écija
    On-Surface Synthesis of Gold Porphyrin Derivatives via a Cascade of Chemical Interactions: Planarization, Self-Metalation, and Intermolecular Coupling
    Chemistry of Materials 31 (2019) 3248-3256.
  5. C. Karageorgaki, P. Mutombo, P. Jelínek, K. H. Ernst
    Chiral Surface from Achiral Ingredients: Modification of Cu(110) with Phthalic Acid
    Journal of Physical Chemistry C 123 (2019) 9121-9127.
  6. J. Su, M. Telychko, P. Hu, G. Macam, P. Mutombo, H. Zhang, Y. Bao, F. Cheng, Z.-Q. Huang, Zh. Qiu, Sh. J. R. Tan, H. Lin, P. Jelínek, F.-Ch. Chuang, J. Wu, J. Lu
    Atomically precise bottom-up synthesis of π-extended [5]triangulene
    Science Advances 5 (2019) eaav7717-1-eaav7717-6.
  7. A. Mairena, J.I. Mendieta, O. Stetsovych, A. Terfort, I. G. Stará, I. Starý, P. Jelínek, K.-H. Ernst
    Heterochiral recognition among functionalized heptahelicenes on noble metal surfaces
    Chemical Communications 55 (2019) 10595-10598.
  8. F. Queck, F. Albrecht, P. Mutombo, O. Krejčí, P. Jelínek, A. McLean, J. Repp
    Interface Dipoles of Ir(ppy)₃ on Cu(111)
    Nanoscale 11 (2019) 12695-12703.
  9. J. R. López Roso Redondo, Petr Lazar, Pavel Procházka, Stanislav Prusa, Jan Lachnitt, B. J. Mallada Faes, A. Cahlík, J. Berger, Břetislav Šmíd, Lukáš Kormoš, P. Jelínek, Jan Čechal, M. Švec
    Identification of Two-dimensional FeO2 Termination of Bulk Hematite ɑ-Fe2O3(0001) Surface
    J. Phys. Chem. C 123 (2019) 14312
  10. M. Telychko J. Su, A. Gallardo Y. Gu, J. I. Mendieta, D. Qi, A. Tadich, Sh. Song, P. Lyu, Zh. Qiu, H. Fang, M. Joo Koh, J. Wu, P. Jelínek, J. Lu
    Strain‐Induced Isomerization in One‐Dimensional Metal–Organic Chains
    Angewandte Chemie International Edition 58 (2019) 18591-18597.
  11. A. J. Gallardo Caparrós, J. Fanfrlík, P. Hobza, P. Jelínek
    Nature of Binding in Planar Halogen–Benzene Assemblies and Their Possible Visualization in Scanning Probe Microscopy
    Journal of Physical Chemistry C 123 (2019) 8379-8386.
  12. L. Colazzo, M. S. G. Mohammed, A. J. Gallardo Caparrós, Z. M. Abd El-Fattah, J. A. Pomposo, P. Jelínek, D. G. de Oteyza
    Controlling the stereospecific bonding motif of Au–thiolate links
    Nanoscale 11 (2019) 15567-15575.
  13. Pablo Merino, M. Švec, Jose Ignacio Martinez, P. Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, P. Jelínek
    Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
    Langmuir 31 (1) (2015) 233-239.
  14. V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
    Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
    Journal of Physics: Condensed Matter 27 (2015) 175002(1)-175002(11).
  15. A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelínek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
    Calculated photo-isomerization efficiencies of functionalized azobenzene derivatives in solar energy materials: azo-functional organic linkers for porous coordinated polymers
    Journal of Physics: Condensed Matter 27 (2015) 134208(1)-134208(11).
  16. Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
    Interplay between Switching Driven by the Tunneling Current and Atomic Force of a Bistable Four-Atom Si Quantum Dot
    Nano Letters 15 (2015) 4356-4363.
  17. K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
    Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
    Nature Communications 6 (2015) 7766(1)-7766(6).
  18. F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
    Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
    Physical Review Letters 115 (2015) 076101-1-076101-5.
  19. J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
    Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
    Small 11 (2015) 3686-3693.
  20. M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
    Charge Redistribution and Transport in Molecular Contacts
    Physical Review Letters 115 (2015) 136101(1)-136101(5).
  21. M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
    Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
    ACS Nano 9 (2015) 9180-9187.
  22. P. Hapala, M. Ondráček, O. Stetsovych, M. Švec, P. Jelínek
    Simultaneous nc-AFM/STM Measurements with Atomic Resolution
    Noncontact Atomic Force Microscopy vol. 3
  23. Mykola Telychko, J. Berger, Zsolt Majzik, P. Jelínek, M. Švec
    Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
    Beilstein Journal of Nanotechnology 6 (2015) 901-906.
  24. P. Jelínek
    Theoretical challenges of simultaneous nc-AFM/STM experiments
    Imaging and Manipulation of Adsorbates Using Dynamic Force Microscopy page 81-92 year 2015 ISBN 978-3-319-17400-6 Part of the series Advances in Atom and Single Molecule Machines
  25. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    Journal of Physics: Condensed Matter 24 (2012) 084003(1)-084003(7).
  26. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    Journal of Physics: Condensed Matter 24 (2012) 084001(1)-084001(10).
  27. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein Journal of Nanotechnology 3 (2012) 249-259.
  28. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969-6976.
  29. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    Journal of Physics: Condensed Matter 24 (2012) 445003-445016.
  30. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelínek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Physical Review B 85 (2012) 125416(1)-125416(9).
  31. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Physical Review B 86 (2012) 121407(R)-121412(R).
  32. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  33. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  34. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.