1. A. Cahlík, J. Hellerstedt, Jesús I. Mendieta-Moreno, M. Švec, V. M. Santhini, S. Pascal, Diego Soler-Polo, S. I. Erlingsson, K. Výborný, P. Mutombo, O. Marsalek, O. Siri, P. Jelínek
    Significance Of Nuclear Quantum Effects In Hydrogen Bonded Molecular Chains
    ACS Nano 15 (2021) 10357-10365.
  2. B. J. Mallada Faes, B. De La Torre Cerdeño, J. I. Mendieta-Moreno, D. Nachtigallová, A. Matěj, M. Matoušek, P. Mutombo, J. Brabec, L. Veis, T. Cadart, M. Kotora, P. Jelínek
    On-Surface Strain-Driven Synthesis of Nonalternant Non-Benzenoid Aromatic Compounds Containing Four- to Eight-Membered Rings
    Journal of the American Chemical Society 143 (2021) 14694-14702.
  3. M. Žonda, O. Stetsovych, R. Korytár, M. Ternes, R. Temirov, A. Raccanelli, F.S.Tautz, P. Jelínek, T. Novotný, M. Švec
    Resolving Ambiguity of the Kondo Temperature Determination in Mechanically Tunable Single-Molecule Kondo Systems
    Journal of Physical Chemistry Letters 12 (2021) 6320-6325.
  4. B. J. Mallada Faes, P. Błoński, R. Langer, P. Jelínek, M. Otyepka, B. De La Torre Cerdeño
    On-Surface Synthesis of One-Dimensional Coordination Polymers with Tailored Magnetic Anisotropy
    ACS Applied Materials and Interfaces 13 (2021) 32393-32401.
  5. H. González-Herrero, J. I. Mendieta-Moreno, S. Edalatmanesh, J. Santos, N. Martín, D. Écija, B. De La Torre Cerdeño, P. Jelínek
    Atomic Scale Control and Visualization of Topological Quantum Phase Transition in π-Conjugated Polymers Driven by Their Length
    Advanced Materials 33 (2021) 2104495(1)-2104495(9).
  6. X. Peng, H. Mahalingam, Sh. Dong, P. Mutombo, J. Su, M. Telychko, Sh. Song, P. Lyu, P.W. Ng, J. Wu, P. Jelínek, Ch. Chi, A. Rodin, J. Lu
    Visualizing designer quantum states in stable macrocycle quantum corrals
    Nature Communications 12 (2021) 5895-1-5895-9.
  7. B. J. Mallada Faes, A. J. Gallardo Caparrós, M. Lamanec, B. De La Torre Cerdeño, V. Špirko, P. Hobza, P. Jelínek
    Real-space imaging of anisotropic charge of σ-hole by means of Kelvin probe force microscopy
    Science 374 (2021) 863-867.
  8. Borja Cirera, Alexander Riss, P. Mutombo, José I. Urgel, José Santos, Marco di Giovannantonio, Roland Widmer, Samuel Stolz, Qiang Sun, Max Bommert, Roman Fasel, P. Jelínek, Willi Auwaerter, Nazarjo Martín, David Écija
    On-Surface Synthesis of Organocopper Metallacycles through Activation of Inner Diacetylene Moieties
    Chemical Science 12 (2021) 12806-12811.
  9. Cristina Martín-Fuentes, José I. Urgel, S. Edalatmanesh, Eider Rodríguez-Sánchez, José Santos, P. Mutombo, Kalyan Biswas, Koen Lauwaet, José M. Gallego, Rodolfo Miranda, P. Jelínek, Nazario Martín, David Écija
    Cumulene-like Bridged Indeno[1,2-b]Fluorene p-Conjugated Polymers Synthesized on Metal Surfaces
    Chemical Communications 57 (2021) 7545-7548.
  10. K. Biswas, J.I. Urgel, K. Xu, J. Ma, A. Sánchez‐Grande, P. Mutombo, A. J. Gallardo Caparrós, K. Lauwaet, B. J. Mallada Faes, B. De La Torre Cerdeño, A. Matěj, J. M. Gallego, R. Miranda, P. Jelínek, X. Feng, D. Écija
    On‐Surface Synthesis of a Dicationic Diazahexabenzocoronene Derivative on the Au (111) Surface
    Angewandte Chemie International Edition 60 (2021) 25551-25556.
  11. J. Su, W. Fan, P. Mutombo, X. Peng, Sh. Song, M. Ondráček, P. Golub, J. Brabec, L. Veis, M. Telychko, P. Jelínek, J. Wu, J. Lu
    On-Surface Synthesis and Characterization of [7]Triangulene Quantum Ring
    Nano Letters 21 (2021) 861-867.
  12. A. Sánchez-Grande, J.I. Urgel, L. Veis, S. Edalatmanesh, J. Santos, K. Lauwaet, P. Mutombo, J.M. Gallego, J. Brabec, P. Beran, D. Nachtigallová, R. Miranda, N. Martín, P. Jelínek, D. Écija
    Unravelling the Open-Shell Character of Peripentacene on Au(111)
    Journal of Physical Chemistry Letters 12 (2021) 330-336.
  13. M. Telychko, G. Li, P. Mutombo, D. Soler-Polo, X. Peng, J. Su, Sh. Song, M. Joo Koh, M. Edmonds, P. Jelínek, J. Wu, J. Lu
    Ultrahigh-yield on-surface synthesis and assembly of circumcoronene into a chiral electronic Kagome-honeycomb lattice
    Science Advances 7 (2021) eabf0269-1-eabf0269-7.
  14. A. Berdonces-Layunta, J. Lawrence, S. Edalatmanesh, J. Castro-Esteban, T. Wang, M.S.G. Mohammed, L. Colazzo, D. Peña, P. Jelínek, D. G. de Oteyza
    Chemical Stability of (3,1)-Chiral Graphene Nanoribbons
    ACS Nano 15 (2021) 5610-5617.
  15. V. M. Santhini, Ch. Wäckerlin, A. Cahlík, M. Ondráček, S. Pascal, A. Matěj, O. Stetsovych, P. Mutombo, P. Lazar, O. Siri, P. Jelínek
    1D Coordination π–d Conjugated Polymers with Distinct Structures Defined by the Choice of the Transition Metal: Towards a New Class of Antiaromatic Macrocycles
    Angewandte Chemie International Edition 60 (2021) 439-445.
  16. V. M. Santhini, O. Stetsovych, M. Ondráček, J. I. Mendieta Moreno, P. Mutombo, B. De La Torre Cerdeño, M. Švec, J. Klívar, I. G. Stará, H. Vázquez, I. Starý, P. Jelínek
    On-Surface Synthesis of Polyferrocenylene and its Single-Chain Conformational and Electrical Transport Properties
    Advanced Functional Materials 31 (2021) 2006391(1)-2006391(11).
  17. J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
    Initial and secondary oxidation products on the Si(111)-(7x7) surface identified by atomic force microscopy and first principles calculations
    Applied Physics Letters 104 (2014) 133107(1)-133107(4).
  18. K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
    Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
    Advanced Materials Interfaces 1 (2014) 1300042(1)-1300042(9).
  19. M. Švec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, J. A. Martín Gago, P. Jelínek
    Silicene versus two-dimensional ordered silicide: Atomic and electronic structure of Si-(√19×√19)R23.4◦/Pt(111)
    Physical Review B 89 (2014) 201412(1)-201412(5).
  20. M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. Švec
    Achieving High-Quality Single-Atom Nitrogen Doping of Graphene/SiC(0001) by Ion Implantation and Subsequent Thermal Stabilization
    ACS Nano 8 (2014) 7318-7324.
  21. E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. Švec, Z. Majzik, A. B. McLean, P. Jelínek
    Identification of Surface Defects and Subsurface Dopants in a Delta-Doped System Using Simultaneous nc-AFM/STM and DFT
    Journal of Physical Chemistry C 118 (2014) 15744-15753.
  22. P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
    Mechanism of high-resolution STM/AFM imaging with functionalized tips
    Physical Review B 90 (2014) 085421(1)-085421(9).
  23. P. Merino, M. Švec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
    Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
    Nature Communications 5 (2014) 3054(1)-3054(9).
  24. P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
    Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
    Physical Review Letters 113 (2014) 226101(1)-226101(5).
  25. M. Ondráček, C. González, P. Jelínek
    Reversal of atomic contrast in scanning probe microscopy on (111) metal surfaces
    Journal of Physics: Condensed Matter 24 (2012) 084003(1)-084003(7).
  26. P. Jelínek, M. Ondráček, F. Flores
    Relation between the chemical force and the tunnelling current in atomic point contacts: a simple model
    Journal of Physics: Condensed Matter 24 (2012) 084001(1)-084001(10).
  27. Z. Majzik, M. Setvín, A. Bettac, A. Feltz, V. Cháb, P. Jelínek
    Simultaneous current, force and dissipation measurements on the Si(111) 7×7 surface with an optimized qPlus AFM/STM technique
    Beilstein Journal of Nanotechnology 3 (2012) 249-259.
  28. M. Setvín, P. Mutombo, M. Ondráček, Z. Majzik, M. Švec, V. Cháb, I. Ošťádal, P. Sobotík, P. Jelínek
    Chemical Identification of Single Atoms in Heterogeneous III-IV Chains on Si(100) Surface by Means of nc-AFM and DFT Calculations
    ACS Nano 6 (2012) 6969-6976.
  29. M. Ondráček, P. Mutombo, Z. Chvoj, A. G. Mark, Z. Chromcová, A.B. McLean, P. Jelínek
    Stability, interaction and influence of domain boundaries in Ge/Si(111)-5 × 5
    Journal of Physics: Condensed Matter 24 (2012) 445003-445016.
  30. A. Yurtsever, D. Fernandez-Torre, C. Gonzalez, P. Jelínek, P. Pou, Y. Sugimoto, M. Abe, R. Perez, S. Morita
    Understanding image contrast formation in TiO2 with force spectroscopy
    Physical Review B 85 (2012) 125416(1)-125416(9).
  31. M. Švec, P. Merino, Y. J. Dappe, C. González, E. Abad, P. Jelínek, J. A. Martín-Gago
    van der Waals interactions mediating the cohesion of fullerenes on graphene
    Physical Review B 86 (2012) 121407(R)-121412(R).
  32. Y. Sugimoto, P. Pou, M. Abe, P. Jelínek, R. Pérez, S. Morita, Ó. Custance
    Chemical identification of individual surface atoms by atomic force microscopy.
    Nature 446 (2007) 64-67.
  33. Y.Sugimoto, P. Jelínek, P.Pou, M.Abe, S.Morita, R. Perez, O. Custance
    Mechanism for Room-Temperature Single-Atom Lateral Manipulations on Semiconductors using Dynamic force Microscopy.
    Physical Review Letters 98 (2007) 106104-1-106104-4.
  34. M.A. Basasnta, Y.J. Dappe, P. Jelínek, J. Ortega
    Optimized atomic-like orbitals fo first-principles tight-binding molecular dynamics.
    Computational Materials Science 39 (2007) 759-766.
  35. Z. Kuntová, P. Jelínek, V. Cháb, Z. Chvoj
    Single atom diffusion of Pb on a Si(111)-7x7 surface.
    Surf. Sci. 566-568 (2004) 130 - 136
  36. W. Kaminski, P. Jelínek, R. Pérez, F. Flores, J. Ortega
    Si-substitutional defects on the alpha-Sn-Si(111)-(r3xr3) surface.
    Appl. Surf. Sci. 234 (2004) 286 - 291
  37. P. Jelínek, R. Peréz, J. Ortega, F. Florez
    Mechanical properties and electrical conductance of different Al nanowire submitted to an homogeneous deformation: a first-principles simulation.
    Surf. Sci. 566-568 (2004) 13 - 23
  38. J. M. Blanco, C. Gonzáles, P. Jelínek, J. Ortega, F. Flores, R. Peréz
    First-principles simulations of STM images: From tuneling to the contact regime.
    Phys. Rev. B 70 (2004) 85405
  39. P. Jelínek, M. Ondřejček, J. Slezák, V. Cháb
    Experimental and theoretical studies of single Pb atom dynamics in one Si(111)-(7x7) unit cell.
    Surf. Sci. 544 (2003) 339 - 347
  40. P. Jelínek, R. Pérez, J. Ortega, F. Flores
    First-principles simulations of the stretching and final breaking of Al nanowires: Mechanical properties and electrical conductance
    Phys. Rev. B 68 (2003) 085403